Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17530 865 / 0 phosphoglucosamine mutase family protein (.1.2.3) AT1G70820 373 / 2e-121 phosphoglucomutase, putative / glucose phosphomutase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G039200 [exp] 1038 / 0 AT5G17530 872 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Potri.008G131400 [exp] 375 / 2e-122 AT1G70820 964 / 0.0 phosphoglucomutase, putative / glucose phosphomutase, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023518 [exp] 893 / 0 AT5G17530 896 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Lus10040402 [exp] 800 / 0 AT5G17530 778 / 0.0 phosphoglucosamine mutase family protein (.1.2.3) Lus10015835 [exp] 366 / 1e-118 AT1G70820 901 / 0.0 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) Lus10009327 [exp] 182 / 2e-52 AT1G70820 478 / 3e-167 phosphoglucomutase, putative / glucose phosphomutase, putative (.1) Lus10020414 [exp] 128 / 8e-33 AT1G70820 344 / 2e-115 phosphoglucomutase, putative / glucose phosphomutase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02878 [poplar] [flax] PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 [poplar] [flax] PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 [poplar] [flax] PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Representative CDS sequence Show only first row Show all	>Potri.010G223000.1 pacid=42799333 polypeptide=Potri.010G223000.1.p locus=Potri.010G223000 ID=Potri.010G223000.1.v4.1 annot-version=v4.1 ATGGCAGCGATTGTTGTAAATGTAATTGTAGCAAAGAATAGGCTGTCGGGGACCAATGAATACTACTCCTACCAAAGTGGTAGGGACTGTTGTTCCGCGG CGGCGGCCCCTTATAACCACCACCGCAACTTGCTTCCCTTTCATGGAGGGAAGAATTTATTGGCATGGAGGAGTGGCATATCTTCCATGCATTTACCAAA ATACCAGACTGCTTTTGTTAAACGACCACCCATTTACTACTGCAATGCTGCTTCATCTACGACCGCGGTGCCATATCTCGATAAGGTTGATTTTATGAAG CTTCAAAATGGCAGTGATATTCGAGGTGTGGCTGTTCCTGGGGTCGAGGGAGAACCTGTTACCCTCACTGAACCAGTTACGGAAGCAATAGCAGCAGCCT TTTCTGCCTGGTTATCGGAAAAGAAAAAAGTTGATGCATCCAAACCTCTGAAGGTGTCTGTAGGTCACGATTCCCGCATATCTGCACAGGTGTTGCAGGA TGCGGTTACTCGAGGTGTTGCCAGCGCAGGCCTGGATGTTGTTCAATATGGATTGGCATCCACCCCTGCAATGTTTAATAGCACACTAACCGAAGATGAG GCATTTTTATGTCCAGTTGATGGGGCTATAATGATAACAGCTAGTCATCTTCCTTACAACAGGAACGGGTTCAAATTCTTCACAAATGCTGGAGGGCTTG GGAAGGCTGACATTAAAAACATTTTAGAGCGCGCTGTGGACATATATAATAGTTTTACAGATGAAGGTTTAATGAAATCAAAAAGGAAAGCTTCTGAATT CTTAAAAAGAGTTGATTACATGACTCTGTATACATCTGATCTTGTAAAGGCAGTCCGTAAAGCTGCAGGAAATATAGAGAAGCCACTGGAGGGATTCCAT ATTGTTGTTGATGCGGGAAATGGAGCAGGAGGATTTTTTGCTGAAAAAGTTCTTCAGCCTTTGGGAGCTATCACTTCTGGCAGCCAGTTCTTGGAACCAG ATGGTATGTTTCCAAATCATATCCCTAATCCAGAGGACAAGACAGCAATGAAAGCTATCACCCAGGCAGTCCTTGAGAACAAGGCTGATTTGGGGATCAT ATTTGATACTGATGTTGACAGATCTGCTGTTGTGGATTCCACTGCTCGTGAGTTCAACCGGAATCGGCTGATTGCCTTGATGTCTGCCATTGTTCTAGAG GAACATCCAGGAACAACTATTGTTACAGACAGTGTGACTTCCGATGGCCTTACTACATTTATTGAAAATAAACTTGGGGGAAAGCACCATCGATTCAAAA GAGGCTATAAAAATGTCATCGATGAGGCTGTTCGTTTGAACTCTGTTGGTGAGGAATCACATCTGGCTATTGAAACCAGTGGCCATGGAGCTCTCAAGGA AAACCACTGGCTTGATGATGGAGCATACCTCATGGTTAAAGTTCTAAATAAACTGGCTTCAGCCAGAGCTTCTGGTATTGCTGGAGGCAGCAAAGTTTTG ACTGACCTGGTAGAGGGTCTGCAGGAACCAAGAGTTGCTGTGGAATTGAGACTGAAAATCGATCAGAATCATCCAGATCTTAAAGGAGGATCTTTCCGAG AATATGGAGAGGCAGTGCTGAAACTTTTGGAGAACCATGTAGAGTCAGATCCAAAGCTTCAGAAAGCTCCTGTTAATTATGAAGGGGTTCGAGTTTCTGG TTTAGGTGGGTGGTTCCTTCTAAGACTCTCACTTCATGATCCTGTTCTTCCCCTTAACATTGAGGCATCTAGCCATGAAGATGCGGTGAAGCTTGGACTT GCTGTGGCTTCCGCTGTCAAGATGTACCCTGCTTTGGATACTTCTGCCTTGGATAAATTTCTCCAAACATCATAA
AA sequence Show only first row Show all	>Potri.010G223000.1 pacid=42799333 polypeptide=Potri.010G223000.1.p locus=Potri.010G223000 ID=Potri.010G223000.1.v4.1 annot-version=v4.1 MAAIVVNVIVAKNRLSGTNEYYSYQSGRDCCSAAAAPYNHHRNLLPFHGGKNLLAWRSGISSMHLPKYQTAFVKRPPIYYCNAASSTTAVPYLDKVDFMK LQNGSDIRGVAVPGVEGEPVTLTEPVTEAIAAAFSAWLSEKKKVDASKPLKVSVGHDSRISAQVLQDAVTRGVASAGLDVVQYGLASTPAMFNSTLTEDE AFLCPVDGAIMITASHLPYNRNGFKFFTNAGGLGKADIKNILERAVDIYNSFTDEGLMKSKRKASEFLKRVDYMTLYTSDLVKAVRKAAGNIEKPLEGFH IVVDAGNGAGGFFAEKVLQPLGAITSGSQFLEPDGMFPNHIPNPEDKTAMKAITQAVLENKADLGIIFDTDVDRSAVVDSTAREFNRNRLIALMSAIVLE EHPGTTIVTDSVTSDGLTTFIENKLGGKHHRFKRGYKNVIDEAVRLNSVGEESHLAIETSGHGALKENHWLDDGAYLMVKVLNKLASARASGIAGGSKVL TDLVEGLQEPRVAVELRLKIDQNHPDLKGGSFREYGEAVLKLLENHVESDPKLQKAPVNYEGVRVSGLGGWFLLRLSLHDPVLPLNIEASSHEDAVKLGL AVASAVKMYPALDTSALDKFLQTS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17530			phosphoglucosamine mutase fami...		Potri.010G223000 [exp]	0	1
AT1G43860			sequence-specific DNA binding ...		Potri.002G073200 [exp]	7.34	0.8030
AT1G04560			AWPM-19-like family protein (....		Potri.017G113000 [exp]	8.18	0.8580
AT5G10830			S-adenosyl-L-methionine-depend...		Potri.005G067500 [exp]	14.14	0.8217
AT2G30000			PHF5-like protein (.1)		Potri.009G072300 [exp]	15.49	0.8504
AT5G35320			unknown protein		Potri.018G132600 [exp]	16.12	0.8525
AT5G41110			unknown protein		Potri.012G104200 [exp]	24.08	0.8452
AT5G48570		ROF2, ATFKBP65	FKBP-type peptidyl-prolyl cis-...		Potri.014G149400 [exp]	25.21	0.8470
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.003G109200 [exp]	28.56	0.8445	HSP23.1
AT4G27670		HSP21	heat shock protein 21 (.1)		Potri.010G053400 [exp]	30.14	0.8389
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G188900 [exp]	34.59	0.8285

Compare expression of checked genes

Potri.010G223000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.