Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30080 776 / 0 ARF ARF16 auxin response factor 16 (.1) AT2G28350 694 / 0 ARF ARF10 auxin response factor 10 (.1) AT1G77850 362 / 9e-117 ARF ARF17 auxin response factor 17 (.1) AT5G37020 271 / 5e-80 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT2G33860 259 / 2e-77 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G30330 266 / 5e-77 ARF ARF6 auxin response factor 6 (.1.2) AT5G60450 263 / 5e-77 ARF ARF4 auxin response factor 4 (.1) AT5G62000 264 / 6e-77 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G19220 267 / 9e-77 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT1G19850 262 / 5e-76 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G039000 [exp] 1285 / 0 AT4G30080 749 / 0.0 auxin response factor 16 (.1) Potri.006G127500 [exp] 838 / 0 AT4G30080 677 / 0.0 auxin response factor 16 (.1) Potri.004G211700 [exp] 827 / 0 AT2G28350 777 / 0.0 auxin response factor 10 (.1) Potri.009G014800 [exp] 825 / 0 AT2G28350 706 / 0.0 auxin response factor 10 (.1) Potri.016G090300 [exp] 805 / 0 AT4G30080 687 / 0.0 auxin response factor 16 (.1) Potri.002G089900 [exp] 379 / 6e-123 AT1G77850 520 / 2e-179 auxin response factor 17 (.1) Potri.005G171300 [exp] 369 / 3e-119 AT1G77850 534 / 0.0 auxin response factor 17 (.1) Potri.005G207700 [exp] 273 / 9e-80 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2) Potri.017G141000 [exp] 270 / 3e-79 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026510 [exp] 786 / 0 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10023519 [exp] 744 / 0 AT4G30080 622 / 0.0 auxin response factor 16 (.1) Lus10040403 [exp] 738 / 0 AT4G30080 625 / 0.0 auxin response factor 16 (.1) Lus10019940 [exp] 736 / 0 AT4G30080 660 / 0.0 auxin response factor 16 (.1) Lus10021467 [exp] 617 / 0 AT4G30080 588 / 0.0 auxin response factor 16 (.1) Lus10024753 [exp] 357 / 2e-114 AT1G77850 494 / 2e-169 auxin response factor 17 (.1) Lus10024754 [exp] 353 / 5e-113 AT1G77850 505 / 1e-173 auxin response factor 17 (.1) Lus10009770 [exp] 353 / 8e-113 AT1G77850 496 / 4e-170 auxin response factor 17 (.1) Lus10016091 [exp] 327 / 9e-107 AT4G30080 315 / 7e-103 auxin response factor 16 (.1) Lus10024320 [exp] 276 / 9e-83 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.010G223200.1 pacid=42796853 polypeptide=Potri.010G223200.1.p locus=Potri.010G223200 ID=Potri.010G223200.1.v4.1 annot-version=v4.1 ATGTTTGAGGCAAAGCTAAGAGACTGTTCTTCCCAAATTCTACAAATCCCAAAACTACAGAGTGGTCCAATGATTAGGGAATTTGCAGTTATGAATTCCC AGAAGGAAAAAATGAGAGTGGCAGAAAAATGTTTAGATTCACAATTATGGCATGCTTGTGCAGGTAGCATGGTTCAAATGCCAGCAGTTAACTCAAAAGT TTTCTACTTTCCACAGGGTCATGCAGAACATGCTCAAGGGAGTGTAGAATTTGGTCACTTCCAGATTCCTGCACTAATCCCTTGTAAGGTATCTGCTATT AAGTACATGGCAGATCCTGAAACCGATGAGGTTTATGCCAAAATTAGGCTAATCCCACTGAATAATAGCGATTTAATGCTTGGACATGGTTGTGGTGAGG ATAATGATGATAGGTTGCACAGTGGGAATGAGTCTCAAGAGAAGCCTGCTTCTTTTGCTAAGACATTGACTCAATCTGATGCTAATAACGGTGGTGGTTT CTCTGTGCCACGTTATTGCGCCGAGACTATATTCCCAAGATTGGATTACACTGCTGAGCCTCCTGTGCAGACCATTCTTGCTAAGGATGTGCACGGAGAG ACCTGGAAGTTTAGGCATATCTATAGAGGGACGCCTCGTCGCCATTTGTTGACTACTGGATGGAGTAATTTTGTGAACCAAAAGAAACTTGTGGCTGGGG ACTCTATTGTGTTTTTGAGAGCAGAGAACGGGGACCTTTGTGTTGGAATTAGACGTGCTAAGAGAGGGATTGGTGGAAATGAATGCTCATCAGGGTGGAA TTCATTTGCGGGCTATTCTGGGTTTTTTAGGGAAGATGAGAGTAAATTGATGAGGAGGAATGGCAATGGGGATATGAAGGGGAAAGTGAAGGCTGAGTCT GTTATTGAAGCTGCATCTCTTGCAGCCAATGGGCAGCCTTTTGAAGCTGTCTATTATCCAAGAGCGAGTACTCCAGAATTTTGTGTAAAGGCCTCAGCTG TGAGGAGTGCAATACAGATTCAGTGGTGTCCAGGGATGAGGTTCAAAATGGCTTTTGAGACTGAGGATTCGTCTCGGATTAGCTGGTTCATGGGAACTAT ATCTTCTGTTCAGGTTGCTGACCCCATCCGCTGGCCCAATTCTCCCTGGCGGCTTCTGCAGGTAGCATGGGATGAGCCAGATCTACTCCATAATGTAAAG CGTGTGAGCCCATGGTTGGTTGAATTGGTATCAAACATGCCAGCCATCCACCTATCACCCTTCTCACCCCCAAGAAAGAAGTTGAGACTTCCACAGCCCC CGGATTTTCCCTTACTTGGTCAAATCCCAATGCCGTCATTTACTGGCAACCCTCTTAGATCGAACAGTCCCTTATGCTGTGTCTCAGATAACATTCCTGC AGGCATACAGGGAGCCAGGCATGCTCAATTTGGACTATCTTCTTCGGATCTCCACTTCAACAAACTGCAGGCGGGACTGTTCCCGGTTGATTTTCAGCGG CTTGATCGTGCTGCCCCTCCTTCTAGAATCTCCAATAGTAACTTCGTTGGCAATACTCAAAACAGCGAGAGTATTTCTTGCTTGCTGACAATGGGAAATT CCTCACAGGGTATGAAGGGCAGTGACACAAAGACACCCCACATTTTATTGTTTGGTCAGCTTATTGTCACCGATCAGCAGAGTTCTCAAAGCTGCTCGGG TGATACAAATGCAAACAGTTCATCAGATGGACATCCAGGGAAGGCAATTTCAGATGGTTCTGGTTCTGCATCACAACAGAATGGTCCGCTGGAAAATTCT TCAGGTGGGAGGTGTCCTTGGTACAAAGATTACCAAAAAACTGATCCTGGCCTGGAGACCGGTCATTGCAAGGTGTTCATGGAATCAGAGGATGTGGGTC GAACCCTTGACCTATCAGTCCTTGGTTCATATGAAGAGCTGCACAGAAAGTTGGTTAATATGTTTGGCATTGAGAGCTCAGAGATGCTGAGCAATGTGCT TTACCGGAATGCAGCTGGCGCCACCAAGCACGCTGGAGATGAACCCTTTAGTGAGTTTTTGAAGACAGCTAGAAGGTTAACGATTCTTTCAGATGCAAGT AGCGACAACGTAGGAAGATAG
AA sequence Show only first row Show all	>Potri.010G223200.1 pacid=42796853 polypeptide=Potri.010G223200.1.p locus=Potri.010G223200 ID=Potri.010G223200.1.v4.1 annot-version=v4.1 MFEAKLRDCSSQILQIPKLQSGPMIREFAVMNSQKEKMRVAEKCLDSQLWHACAGSMVQMPAVNSKVFYFPQGHAEHAQGSVEFGHFQIPALIPCKVSAI KYMADPETDEVYAKIRLIPLNNSDLMLGHGCGEDNDDRLHSGNESQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTAEPPVQTILAKDVHGE TWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGNECSSGWNSFAGYSGFFREDESKLMRRNGNGDMKGKVKAES VIEAASLAANGQPFEAVYYPRASTPEFCVKASAVRSAIQIQWCPGMRFKMAFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVAWDEPDLLHNVK RVSPWLVELVSNMPAIHLSPFSPPRKKLRLPQPPDFPLLGQIPMPSFTGNPLRSNSPLCCVSDNIPAGIQGARHAQFGLSSSDLHFNKLQAGLFPVDFQR LDRAAPPSRISNSNFVGNTQNSESISCLLTMGNSSQGMKGSDTKTPHILLFGQLIVTDQQSSQSCSGDTNANSSSDGHPGKAISDGSGSASQQNGPLENS SGGRCPWYKDYQKTDPGLETGHCKVFMESEDVGRTLDLSVLGSYEELHRKLVNMFGIESSEMLSNVLYRNAAGATKHAGDEPFSEFLKTARRLTILSDAS SDNVGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Potri.010G223200 [exp]	0	1
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Potri.008G039000 [exp]	1.41	0.8358
					Potri.019G129350 [exp]	2.82	0.8423
AT1G35830			VQ motif-containing protein (....		Potri.002G094900 [exp]	6.92	0.8284
AT1G22930			T-complex protein 11 (.1.2)		Potri.003G018500 [exp]	7.74	0.7890
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G129300 [exp]	8.66	0.8332
AT2G31800			Integrin-linked protein kinase...		Potri.017G007800 [exp]	12.36	0.7732
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.006G033500 [exp]	12.64	0.7963
AT1G70140		ATFH8	formin 8 (.1)		Potri.008G192900 [exp]	13.85	0.8065
AT5G57910			unknown protein		Potri.018G105300 [exp]	14.14	0.7444
AT2G45420	AS2	LBD18, ASL20	LOB domain-containing protein ...		Potri.002G149000 [exp]	14.83	0.7927

Compare expression of checked genes

Potri.010G223200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.