Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54800 921 / 0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) AT2G28320 900 / 0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT4G19040 358 / 3e-113 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G45560 350 / 3e-110 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT5G35180 206 / 2e-56 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT5G10750 182 / 5e-52 Protein of unknown function (DUF1336) (.1) AT1G06050 177 / 7e-50 Protein of unknown function (DUF1336) (.1) AT5G24990 160 / 3e-44 Protein of unknown function (DUF1336) (.1) AT5G25010 159 / 9e-44 Protein of unknown function (DUF1336) (.1) AT5G25020 122 / 1e-30 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038800 [exp] 1281 / 0 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.009G011200 [exp] 937 / 0 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Potri.003G100600 [exp] 340 / 4e-106 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.018G113100 [exp] 282 / 7e-84 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.001G132900 [exp] 201 / 5e-55 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.018G014234 [exp] 187 / 3e-53 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1) Potri.008G213000 [exp] 196 / 5e-53 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.007G130400 [exp] 168 / 2e-46 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1) Potri.017G027700 [exp] 165 / 2e-45 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040406 [exp] 988 / 0 AT2G28320 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10023522 [exp] 929 / 0 AT2G28320 883 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10021465 [exp] 893 / 0 AT2G28320 1056 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10016094 [exp] 816 / 0 AT2G28320 979 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10007596 [exp] 342 / 6e-107 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10012149 [exp] 338 / 2e-105 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10040015 [exp] 286 / 3e-85 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10040011 [exp] 225 / 3e-63 AT5G35180 820 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019591 [exp] 216 / 3e-60 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019068 [exp] 207 / 4e-58 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF00169 [poplar] [flax] PH PH domain CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain CL0209 [poplar] [flax] PF07059 [poplar] [flax] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Potri.010G223400.1 pacid=42799044 polypeptide=Potri.010G223400.1.p locus=Potri.010G223400 ID=Potri.010G223400.1.v4.1 annot-version=v4.1 ATGGAAGGGTGGCTGTATGTCATCAGGTCCAATAGGTTTGGTTTACAGTTTTCACGCAAAAGGTATTTCATTCTTCAAGAAAACTACCTCAAATGCTACA AAACAAGACCCATCTCACAGGAAGAGGAGCCACTTAGAAGTGCAAATATAGACTCTTACATTCGCATTACAGATAATGGAAGAGAGAGCATCAATAGGAA AGTCTTCTTCATTTTCACGCTTTATAATACTTTAAAAGACAATGATCAACTTAAGTTGGGAGCAAGTAGTTCAGAAGATGCGGGAAAATGGATTCGTTCC TTACAGAATGCTGTGGTGAAGGAGTGCCCAAATCCAGAAAAGGAATTTATGTCTTTCTCTAAGAAGAACTGGCCACCTTCAAGATTTGGCAGTTCAAAGA GGGCTGGCAGTAAAAGATCTGTAGGTTATTACCCCTTCTTGCAGAATGAGGCGGTGACATCTGATGTAATAGCCCCGTCAACATGGAAGATTTTTGGTTG TCAGAACGGATTGCGTCTCTTCAAAGAAGCAAAAGATTGGGATTCTCGGGGGAGGCATTGGGATGATCATCCAGCTATAATGGCAGTTGGTGTGGTTGAT GGAACTCCAGAAGCCATTTTCCGTACTCTTATGTCTCTTGGTGCCTCGAGATCAGAATGGGACTTCTGTTTTTACAGGGGCAGTGTTGTTGAGCACCTTG ATGGTCACACAGATATTCTTCACAAGAAGTTATACAGCAATTGGCTACCCTGGGGGATGAGGCGAAGAGATTTGTTGTTGCGACGATATTGGAGAAGAGA GGAAGATGGAACATATGTAATTCTATACCATTCTGTGATTCACAAGAAGTGTCCTCCACAAAAAGGATATGTTCGAGCTTGCCTTAAAAGTGGAGGATAT GTAATAACTCCTGTAAATCAAGGAAGAGAATCGCTTGTGAAACACATGCTTGCAATTGATTGGAAGTTTTGGAAAGTATATCTGCGTCCACCGTCTGCAA GATCTATAACCATCCGTATGCTTGAAAGAATTGCAGCACTGAGGGAGCTGTTCCGAGCCAAATCTGGCAACCATCCATCTGACTTCTCTTCTTCAGATTC ATCAGTAAAAACAATGTTGCCCCAGGATGGAATGGAGGATATTGAATCAGAAGATAAAGGCCAACAGAAGTTCGAGCAGAATGCTGATTTAAAGGAAAAC GAGGCAGAAAAAACAAATTCAGGACGCAGAAGTTTGATGAGCCTGAATGATGCCTCTGATGAATTCTTTGATTTTCCTGATTCCAATGAAGATATAGATT TTGACCTCTTGGAGAATGGCTGGTATCCTGAAAAGAGTCAAGAACAGCCTACTTCGCATATATGCCAGCACAGATTATCATCTGCCGCTGTCTTTGTGAA GAAGTTACATGATCTTGCAGTTCAGAAGAAGGGTTATATAGACTTTCAGGAGTTGCCTAAAGATGAAAATGTAGCAACATCCTATGGTAATACTCTTCAG AAGGACTCAACCTATTCTTTACCTTGCAGTTGGGCTACTGCCGAGCCCTCTACCTTTTTGATTCGTGGAGAAAATTATTTAAAAGACAATCAGAAGATCA AAGCAAAAGGTTCATTAATGCAAATGGTTGGAGCCGATTGGCTAAGATCCGACCACCGAGAGGATGATCTTGGAAGCCGTCCTGAGAGTATCATTCAGAA GTATGCAGCACAAGGTCGACCAGAATTCTTCTTCGTCATCAATATACAGGTCCCCGGTGCAACCCAGTATACCATCGCGCTATATTATATGTTAAAAACT CCTCTGGAAGAAACTCCCTTGCTACACAGCTTTGTCCACGGTGATGACGCCTTTAGGAATTCAAGATTTAAGCTCATACCTTATATTTCTAAGGGATCGT GGATAGTCAAGCAGAGTGTTGGTAAGAAAGCTTGCTTAGTTGGTCAAGCACTAGAAATACATTATTTTCGTGGGAAGAATTACTTGGAGCTTGACATTGA TGTCGGATCTTCCACCGTTGCCAGGGGGGTGGTCAGTCTTGTTCTCGGATACCTAAACAATTTGGTCATAGAAATGGCATTTCTCGTGCAGGGTAACAAC GAGGAGGAGCTCCCGGAAATCCTTCTCGGAACTTGTCGACTCAATAATCTGGATGTATCCAAATCCGTCCCTGTATAG
AA sequence Show only first row Show all	>Potri.010G223400.1 pacid=42799044 polypeptide=Potri.010G223400.1.p locus=Potri.010G223400 ID=Potri.010G223400.1.v4.1 annot-version=v4.1 MEGWLYVIRSNRFGLQFSRKRYFILQENYLKCYKTRPISQEEEPLRSANIDSYIRITDNGRESINRKVFFIFTLYNTLKDNDQLKLGASSSEDAGKWIRS LQNAVVKECPNPEKEFMSFSKKNWPPSRFGSSKRAGSKRSVGYYPFLQNEAVTSDVIAPSTWKIFGCQNGLRLFKEAKDWDSRGRHWDDHPAIMAVGVVD GTPEAIFRTLMSLGASRSEWDFCFYRGSVVEHLDGHTDILHKKLYSNWLPWGMRRRDLLLRRYWRREEDGTYVILYHSVIHKKCPPQKGYVRACLKSGGY VITPVNQGRESLVKHMLAIDWKFWKVYLRPPSARSITIRMLERIAALRELFRAKSGNHPSDFSSSDSSVKTMLPQDGMEDIESEDKGQQKFEQNADLKEN EAEKTNSGRRSLMSLNDASDEFFDFPDSNEDIDFDLLENGWYPEKSQEQPTSHICQHRLSSAAVFVKKLHDLAVQKKGYIDFQELPKDENVATSYGNTLQ KDSTYSLPCSWATAEPSTFLIRGENYLKDNQKIKAKGSLMQMVGADWLRSDHREDDLGSRPESIIQKYAAQGRPEFFFVINIQVPGATQYTIALYYMLKT PLEETPLLHSFVHGDDAFRNSRFKLIPYISKGSWIVKQSVGKKACLVGQALEIHYFRGKNYLELDIDVGSSTVARGVVSLVLGYLNNLVIEMAFLVQGNN EEELPEILLGTCRLNNLDVSKSVPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54800			Pleckstrin homology (PH) and l...		Potri.010G223400 [exp]	0	1
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.003G215400 [exp]	1.00	0.8002
AT3G15260			Protein phosphatase 2C family ...		Potri.011G116700 [exp]	4.69	0.7199
AT2G15730			P-loop containing nucleoside t...		Potri.004G143300 [exp]	25.29	0.6639
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Potri.014G129900 [exp]	30.16	0.6459
AT1G78610		MSL6	mechanosensitive channel of sm...		Potri.001G384100 [exp]	35.25	0.6436
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G086000 [exp]	36.33	0.6344
AT5G54850			unknown protein		Potri.001G421000 [exp]	49.56	0.6469
AT1G51540			Galactose oxidase/kelch repeat...		Potri.010G252100 [exp]	52.30	0.5881
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.008G112600 [exp]	54.35	0.6377
AT1G02960			unknown protein		Potri.002G208058 [exp]	62.34	0.6382

Compare expression of checked genes

Potri.010G223400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.