Plant FIBer expression Database

Potri.010G223500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01720 683 / 0 Ribophorin I (.1)
AT1G76400 471 / 5e-162 Ribophorin I (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G038700
[exp]
856 / 0 AT2G01720 677 / 0.0 Ribophorin I (.1)
Potri.005G255000
[exp]
496 / 1e-171 AT1G76400 816 / 0.0 Ribophorin I (.1)
Potri.002G006600
[exp]
492 / 4e-170 AT1G76400 817 / 0.0 Ribophorin I (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023524
[exp]
694 / 0 AT2G01720 650 / 0.0 Ribophorin I (.1)
Lus10040410
[exp]
692 / 0 AT2G01720 645 / 0.0 Ribophorin I (.1)
Lus10025159
[exp]
506 / 2e-175 AT1G76400 843 / 0.0 Ribophorin I (.1)
Lus10016038
[exp]
318 / 2e-103 AT1G76400 595 / 0.0 Ribophorin I (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04597 Ribophorin_I Ribophorin I
Representative CDS sequence
>Potri.010G223500.3 pacid=42797235 polypeptide=Potri.010G223500.3.p locus=Potri.010G223500 ID=Potri.010G223500.3.v4.1 annot-version=v4.1
ATGGCTAGGTCAACGGCCATGAAAGCAGCGGGACTCATTCTAGCTCTCTTGATCTTCACATTTCTCACTCTTGCCGTTTCCTCCTCAAATAACCAGATCC
AAATCCTCAACGCCGAACGTAGAATTGACTTGAGTTCACATATCGTCAAGGTCTTCTTAACTTTAAAGGTTGAAAATGTTGGGACAACTCCTGCTTCAGA
AATCCTTCTTGCATTCCCACCTTCGCAAGCTGATCACCTAGCACTTGTCAAAGCACAAGCAGCTATAGGCAAGAAGAAGAAGAAAAGTTACGTTCATCTT
GATGTAAATCCAACAGAGCTACCTGATGCGCCAAATGGAACTAAATATTTTAGCATATCTTTACTGGATCCATTAAGTTTGGGTGAAACTGCCACTCTGG
AAGTGCTTTATATATTAACACATTCTCTGGAACCTTTCCCAGCAGAGATAAGCCAATCGGAATCGCAATTGGTATATTTCCGTGATAGTGCATTAATACT
GTCACCATATCATATTAAGCAGCAAACTACTTTTATTAAGACACCAAGTACAAAAGTGGAATCATATACAAGAGTGGAACCCACCAAGTTTGCTGGCAGA
GAACTGAAGTATGGACCATATGAAGACCGGCCTCCATATTCATTTTCTCCAGTAATTGTTCATCTTGAGAATAACAGCCCATTTGCAGTTGTTGAGGAGC
TTTTACGAGAAGTGGAGATATCTCACTGGGGCAACCTTCAGATAACAGAGCATTACAAGTTGGCTCATGCTGGTGCTAGACACAAAGGCGTGTTTTCAAG
GGTTGATTATCAATCTAGGCCATCTATTAAAGGTGCGTCTTCATTCAAGCACCTTCTAGCAAGTCTACCACCTAGGGTGCACTCTGTGTATTACCGGGAT
GAAATCGGAAACATCTCATCGTCACATTTACGTACAGATTACCGTAAGTCAGAACTTGAAATTGAACCACGGTATCCTTTATTTGGAGGTTGGAAGGCTA
CCTTTGTTATTGGATACGGGCTACCACTGGAAGACTTCCTTTTTGAGTCTCCTGATGGCAAGCGATACCTCAACTTCAGCTTTGGTTGTCCTCTTGCCCA
GACTGTTGTGAACAAGCTGACCATCAAAGTTGTGCTGCCAGAAGGATCAAAAGACCCTTCAGCTGCTGTTCCTTTTCCAGTGGAGCAGCATCTAGAGACC
AAATATTCATACCTTGATGTTGTTGGGAGGACCGTGCTGGTTCTGGAAAAGAAAAATGTAGTTCCTGAGCACATTACGCCTTTCCAGGTTTATTACACTT
TCAAACCTATATTCATGCTAGCAGAACCGCTGATGTTGGCATCAGTATTTTTCTTGTTTTTCATGGCATGTGTAGCTTACCTACAGATTGATATTTCCAT
CCGCAAGTGA
AA sequence
>Potri.010G223500.3 pacid=42797235 polypeptide=Potri.010G223500.3.p locus=Potri.010G223500 ID=Potri.010G223500.3.v4.1 annot-version=v4.1
MARSTAMKAAGLILALLIFTFLTLAVSSSNNQIQILNAERRIDLSSHIVKVFLTLKVENVGTTPASEILLAFPPSQADHLALVKAQAAIGKKKKKSYVHL
DVNPTELPDAPNGTKYFSISLLDPLSLGETATLEVLYILTHSLEPFPAEISQSESQLVYFRDSALILSPYHIKQQTTFIKTPSTKVESYTRVEPTKFAGR
ELKYGPYEDRPPYSFSPVIVHLENNSPFAVVEELLREVEISHWGNLQITEHYKLAHAGARHKGVFSRVDYQSRPSIKGASSFKHLLASLPPRVHSVYYRD
EIGNISSSHLRTDYRKSELEIEPRYPLFGGWKATFVIGYGLPLEDFLFESPDGKRYLNFSFGCPLAQTVVNKLTIKVVLPEGSKDPSAAVPFPVEQHLET
KYSYLDVVGRTVLVLEKKNVVPEHITPFQVYYTFKPIFMLAEPLMLASVFFLFFMACVAYLQIDISIRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G01720 Ribophorin I (.1) Potri.010G223500
[exp]
0 1
AT1G61790 Oligosaccharyltransferase comp... Potri.011G025700
[exp]
2.44 0.8010
AT4G01320 ATSTE24 Peptidase family M48 family pr... Potri.002G162700
[exp]
3.74 0.7562 ATSTE24.2
AT1G45000 AAA-type ATPase family protein... Potri.002G031400
[exp]
10.58 0.7715 RPT4.2
AT5G57490 VDAC4, ATVDAC4 ARABIDOPSIS THALIANA VOLTAGE D... Potri.006G169400
[exp]
12.96 0.7757
AT4G39220 ATRER1A Rer1 family protein (.1) Potri.007G047800
[exp]
15.96 0.7177
AT1G78570 ATRHM1, RHM1, R... REPRESSOR OF LRX1 1, ARABIDOPS... Potri.001G383500
[exp]
19.05 0.7870
AT3G51010 unknown protein Potri.007G018300
[exp]
20.49 0.7556
AT5G57020 ATNMT1, NMT1 ARABIDOPSIS THALIANA MYRISTOYL... Potri.006G147500
[exp]
21.54 0.6798 Pt-NMT1.6
AT5G03345 unknown protein Potri.006G125300
[exp]
23.55 0.7776
AT1G20200 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2... Potri.004G176600
[exp]
27.14 0.7578

Potri.010G223500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.