Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03250 682 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G30440 634 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G13600 608 / 0 Phototropic-responsive NPH3 family protein (.1) AT3G44820 464 / 4e-156 Phototropic-responsive NPH3 family protein (.1) AT5G66560 410 / 7e-135 Phototropic-responsive NPH3 family protein (.1) AT3G50840 370 / 1e-120 Phototropic-responsive NPH3 family protein (.1) AT5G48800 338 / 4e-108 Phototropic-responsive NPH3 family protein (.1) AT4G31820 321 / 6e-102 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT2G47860 320 / 6e-101 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT5G67385 317 / 8e-100 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038600 [exp] 1096 / 0 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 734 / 0 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 674 / 0 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 649 / 0 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 465 / 5e-157 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 462 / 5e-156 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 447 / 1e-149 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G130700 [exp] 436 / 5e-145 AT5G66560 733 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 389 / 7e-127 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040409 [exp] 775 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 770 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 757 / 0 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 744 / 0 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 634 / 0 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 623 / 0 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 620 / 0 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026511 [exp] 607 / 0 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10037432 [exp] 459 / 1e-154 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 457 / 9e-154 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.010G223600.1 pacid=42798967 polypeptide=Potri.010G223600.1.p locus=Potri.010G223600 ID=Potri.010G223600.1.v4.1 annot-version=v4.1 ATGGCTTGCATGAAGCTGGGATCAAAATCAGAAGTGTTTCATCTTGATGGCCATACCTGGCTTTGCTCAACCGGGCTTCAAAGTGATGTCATTATTGAAA TTGGGGAGACGTCTTTCCATCTCCACAAGTTTCCATTGCTCTCTAGAAGTGAAGCGCTAGCAAATCTTACTGGAGATCATTCTAGCGAGAATGAGAAAAG GTGTGTTCTACAACTTCATGATGTACCTGGTGGAGCAAAAACCTTCTTGCTCATTGCCAAATTCTGTTATGGAGTAAAAATGGAACTCACAACATTGAAT GTAGTCAGTCTCAGATGTGCTGCTGAGTATTTTGGGATGAGCGAAGATTATGGGGAGGAAAACCTCATCGCACAAACAGAAAATTTTCTCAATGAAGTAT TTGGCGGCTGGACAGACTCCCTTAAAGCTCTTGAAACCTGTGAAAACGTTCTAGCACAAGCTGAAGAGCTTCATATTGTTTCGAGATGCATAAATTCCCT GGCAATGAAAGCTTCTACAGATCCAAGCTTGTTCAGTTGGCCCATGCAAGGAGGCAGCGACATGAGGAACCCAGATGGCACTGTATTCTGGAATGGAATA CGTACTTCAGCCAAGCTGCATCCTGTGGGTGAGGATTGGTGGTATGAGGATGTTTCCTTGCTTAGACTACCTCTGTACAAAAGGCTAATTCTGGCAGTTC GTTCAAATGATATGAAGCCTGAGAGGGTTGCTGGGGCACTAATGTACTATGCAAAGAGGCATCTGCCTTTGCTGGGCAGGGAATCAAGCATTGAGAGTGG AAACTTTGCTGCGCCTAGATCAACAATTTCTGGTACTTCTGAAGCAGATCAAAGGAATCTTCTTGAAGAATTAGTGGGATTGTTACCTGATCAAAAGGGT GTTACTCCAAGCAATTTCCTGCTTAGACTTTTGCGAACTGCCATGATGATACATGCCAGTCCATCATGCCGAGGGAATTTAGAGAAACGGGTTGGAGTCC AGTTGGACCAAGCATCTCTTCAAGACCTTCTGATACCAAATACAGGATACTTAGTGGAAACCCTTTATGATATTGACTGTGTTCAGCGAATTCTCAATCA TTTCATGCTGGTGGATCATGATGATCCTACATCAAATTACATAGTAGATGAGGAGCAAATGATGGAAGGTTCTCGTTTCCCAACTCCAATAACAACAGTG GCAAATCTGATCGATAGTTATCTAGCAGAGGTGGCACCTGATGTTAATCTGAAGTTAGCAAAGTTTCAGTCCCTTGCTGCTGCTGTCCCTGAATACGCCA GGCCATTAGATGATGGAATTTACCGAGCAATAGACATATATCTAAAGGCGCATCCATGGCTAACGGATTCGGAACGGGAACAACTTTGCAGGCTCATGAA CTGTCAGAAGTTTTCATTGGAAGCCAGCACTCACGCAACCCAGAATGAGAGGCTACCTCTTAGAGTCACTGTCCAAGTTGTATTCTTTGAACAACTACGG CTTCGCACCTCTGTTTCTGGCTTGTTTTTTGTCTCTGAAAACCTTGATAATTCACGAAATCTAAGTGGGAATCTTGCTCTTGCCAGAAATGGTTTGCACA CTGAAGCAGGAGCCACACATGGCCGCATTGTGGTTGATGACATGAAAAGGCGAGTTTCTGAGCTCGAGAAAGAGTGCTTGAGCATGAAACAAGAGATTGA GAAGATGGGGAAAACAAAGTTGGGGAGTTGGAACAACTTGTTCAGAAAGTTTGGTTTTAGCCATTCAAAGTCAAAACCTGGGGATCCTAAAGCATCAAAA CCAACCGATACCAAAGAATCACCAACATCCTCAGCACCACTCGTGAATGGAGGAGAACATCCCAATAACGAATCAGTAGAATGA
AA sequence Show only first row Show all	>Potri.010G223600.1 pacid=42798967 polypeptide=Potri.010G223600.1.p locus=Potri.010G223600 ID=Potri.010G223600.1.v4.1 annot-version=v4.1 MACMKLGSKSEVFHLDGHTWLCSTGLQSDVIIEIGETSFHLHKFPLLSRSEALANLTGDHSSENEKRCVLQLHDVPGGAKTFLLIAKFCYGVKMELTTLN VVSLRCAAEYFGMSEDYGEENLIAQTENFLNEVFGGWTDSLKALETCENVLAQAEELHIVSRCINSLAMKASTDPSLFSWPMQGGSDMRNPDGTVFWNGI RTSAKLHPVGEDWWYEDVSLLRLPLYKRLILAVRSNDMKPERVAGALMYYAKRHLPLLGRESSIESGNFAAPRSTISGTSEADQRNLLEELVGLLPDQKG VTPSNFLLRLLRTAMMIHASPSCRGNLEKRVGVQLDQASLQDLLIPNTGYLVETLYDIDCVQRILNHFMLVDHDDPTSNYIVDEEQMMEGSRFPTPITTV ANLIDSYLAEVAPDVNLKLAKFQSLAAAVPEYARPLDDGIYRAIDIYLKAHPWLTDSEREQLCRLMNCQKFSLEASTHATQNERLPLRVTVQVVFFEQLR LRTSVSGLFFVSENLDNSRNLSGNLALARNGLHTEAGATHGRIVVDDMKRRVSELEKECLSMKQEIEKMGKTKLGSWNNLFRKFGFSHSKSKPGDPKASK PTDTKESPTSSAPLVNGGEHPNNESVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03250			Phototropic-responsive NPH3 fa...		Potri.010G223600 [exp]	0	1
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Potri.007G080300 [exp]	1.41	0.8185
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.019G006570 [exp]	3.46	0.8053
AT1G32583			unknown protein		Potri.006G017600 [exp]	6.00	0.7526
AT5G26010			Protein phosphatase 2C family ...		Potri.006G232700 [exp]	7.14	0.7286
AT5G11040		AtTRS120	TRS120 (.1)		Potri.006G259500 [exp]	10.95	0.7759
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Potri.001G279500 [exp]	12.64	0.7844
					Potri.011G149950 [exp]	15.23	0.7602
AT2G42410	C2H2ZnF	ATZFP11, ZFP11	zinc finger protein 11 (.1)		Potri.002G041700 [exp]	16.12	0.7387
AT1G55210			Disease resistance-responsive ...		Potri.003G216200 [exp]	33.66	0.7357
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.007G097600 [exp]	33.67	0.7284

Compare expression of checked genes

Potri.010G223600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.