Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38970 892 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 807 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT5G60710 751 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G08050 595 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G49665 219 / 3e-61 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G22680 174 / 1e-45 WAVH1 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G65683 164 / 2e-42 WAVH2 WAV3 homolog 2, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37890 158 / 2e-40 EDA40 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038450 [exp] 1301 / 0 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G010350 [exp] 860 / 0 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G148400 [exp] 474 / 8e-159 AT2G38970 475 / 3e-159 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 472 / 7e-158 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.002G107902 [exp] 235 / 8e-67 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.016G001300 [exp] 136 / 1e-33 AT5G60710 156 / 1e-40 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G000900 [exp] 132 / 2e-32 AT3G54780 147 / 1e-37 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) Potri.001G166800 [exp] 46 / 0.0001 AT1G19110 753 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.018G062500 [exp] 45 / 0.0001 AT1G19110 882 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023527 [exp] 1014 / 0 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 955 / 0 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10041321 [exp] 667 / 0 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 664 / 0 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10021458 [exp] 654 / 0 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028224 [exp] 161 / 4e-44 AT5G49665 286 / 5e-91 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10003485 [exp] 167 / 4e-43 AT2G22680 522 / 9e-177 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042930 [exp] 158 / 1e-40 AT5G49665 397 / 7e-129 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037391 [exp] 148 / 1e-39 AT5G60710 181 / 6e-52 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037392 [exp] 134 / 8e-36 AT5G60710 157 / 7e-45 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [poplar] [flax] vWA-like PF00092 [poplar] [flax] VWA von Willebrand factor type A domain CL0128 [poplar] [flax] PF14624 [poplar] [flax] Vwaint VWA / Hh protein intein-like CL0229 [poplar] [flax] RING PF17123 [poplar] [flax] zf-RING_11 RING-like zinc finger
Representative CDS sequence Show only first row Show all	>Potri.010G223766.1 pacid=42797188 polypeptide=Potri.010G223766.1.p locus=Potri.010G223766 ID=Potri.010G223766.1.v4.1 annot-version=v4.1 ATGGGAAGTAAATGGAGAAAAGCAAAGCTGGCTTTGGGTTTAAATCTTTGTGTTTATGTACCTAGAACTCTAGATGACTCAGCAGCACCTTCAAGTGAAA GATTATCTGATGCTGCTTTGCTTTCACCAAAAAATTGGGATTCTAGACCAATGACACCGACACCATCTTCGCATGGGTTACGGTTGGCCAAGAGTGGAAG CAAATCATCCAAGCAAACCTGCTCGATATGCCTGGCCAAGATGAAACAAGGTGATGGACATGCGATTTTTACTGCAGAGTGCTCACATTCCTTCCATTTC CACTGCATTTCTTCAAATGTGAAACATGGCAACCAACTTTGTCCAGTTTGCAGAGCGAAATGGAAAGAAATCCCCTTTCAGGCACCAACTTTGGATCCAC TGCCTGGGAGAGCATCAGCGGGTTGGCCTCAAACTGATGCTTTGATGACTATGGTCCACCGATTACCTCCCCCGCCACGTCGAGATCTTAATCGGCGACA TGTGTCATTGCTGCAGGCTCCTGAACCTAGTGTTTTCGATGATGATGAATCCTTAGATCTCCAACCTGCATCCTCTGAGAGAAGCTCCGGCAATAAAAAT GATGCAGGCCACAATCCTGCTAAAACAGTTGAGATCAAAACGTACCCAGAAGTGTCAGCTGCATCATGTTCTAATTCTTACGATAACTTCACTGTCTTGG TCCATATCAAAGCTGCTGCAACAGTTGGAAGATTAAACCCCAGAGGAAACCAGGCTAGCTTGCCTCAACTATCTCAAACTCCACGTGCTCCGGTTGATTT AGTCACAGTGCTTGACATCAGTGGTAGCATGGCAGGTACAAAGCTGGCATTGCTAAAACGAGCAATGGGGTTTGTTATTCAGAACCTTGGTTCCAATGAC AGGCTCTCGGTTATTGCCTTTTCTTCTACTGCTCGCCGCCTCTTTCCCCTTCGTAGAATGTCTGACACAGGTCGGCAGCATGCACTTCAAGCAGTCAACG CTTTGGTTGCGAATGGTGGGACCAACATTGCTGAAGGTCTGAGAAAGGGAGCCAAGGTAATGGAAGACCGAAGGGAAAAGAATCCTGTGGCAAGTATTAT ACTGCTATCTGATGGGCAGGATACTTATACTGTCAGTGGTAATGGTGGTAACCAACCTCAACCAAACTACCAGCTGCTCCTCCCTGTGTCGATTCATGGT GGTGACAATGCTGGATTCCAGATTCCGGTGCATGCTTTTGGCTTTGGCGCTGACCATGATGCTTCATCAATGCATTCCATTTCTGAAATTTCTGGAGGCA CCTTCTCTTTTATTGAGACTGAAGCTGTTATCCAGGATGCATTTGCACAGTGCATTGGGGGTCTTCTAAGTGTCGTTGTGCAGGAGTTGCAAGTGGGAGT TGAGTGTATGCACCCTAGTGTCCACCTTGGCTCATTGAAAGCAGGAAGTTACCCTAGTCGTGTGATGGTTGATGCCCGCTCTGGGTTTATAGATGTTGGA GATTTATATGCTGATGAAGAGAGAGATTTCCTGGTTTCGGTCAATGTTCCAGCAGAGCCTTCCAGGAATCAAACATCACTGCTAAAGGTGAGATGTGCAT ACAGGGATCCTTTAACTAAAGAAATGGCAACATTAGAAAGTGAAGAAATTAAACTTGAAAGACCTGAAATATCTGGAGAAGCAATAGTGTCAATTGAAGT GGATAGGCAACGCAACAGGTTCCAAGCAGCTGAAGCAATGTCACGGGCAAGAACCACAGCTGAACGAGGAGATCTAGCTGGTGCAGCTTCTATCCTTGAA AACTGTCGAATGTTATTGTCAGAAACTGTGTCAGCTAAGTTCCATGATCGATTATGTATTGGACTAGATGCTGAGCTCAAGGAGATGCAAGAAAGGATGG CAAGCAGACATGTATACGAGGCATCTGGGAGAGCGTATATTCTATCAGGCCTCAGCTCGCACTCATGGCAAAGAGCAACTGTGAGAGGAGACTCCACTGA TGGTTCAAGTCTTGTTCAATCTTATCAAACCCCATCAATGACGGAGATGCTCGCTCGATCTCAGGCTACATTCCTGGGCAGTCCATCAACTCAGAGGCTT GTTCAACCATCATGGTCATTTGGATCACAACCAAAGCCAAGGTGA
AA sequence Show only first row Show all	>Potri.010G223766.1 pacid=42797188 polypeptide=Potri.010G223766.1.p locus=Potri.010G223766 ID=Potri.010G223766.1.v4.1 annot-version=v4.1 MGSKWRKAKLALGLNLCVYVPRTLDDSAAPSSERLSDAALLSPKNWDSRPMTPTPSSHGLRLAKSGSKSSKQTCSICLAKMKQGDGHAIFTAECSHSFHF HCISSNVKHGNQLCPVCRAKWKEIPFQAPTLDPLPGRASAGWPQTDALMTMVHRLPPPPRRDLNRRHVSLLQAPEPSVFDDDESLDLQPASSERSSGNKN DAGHNPAKTVEIKTYPEVSAASCSNSYDNFTVLVHIKAAATVGRLNPRGNQASLPQLSQTPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSND RLSVIAFSSTARRLFPLRRMSDTGRQHALQAVNALVANGGTNIAEGLRKGAKVMEDRREKNPVASIILLSDGQDTYTVSGNGGNQPQPNYQLLLPVSIHG GDNAGFQIPVHAFGFGADHDASSMHSISEISGGTFSFIETEAVIQDAFAQCIGGLLSVVVQELQVGVECMHPSVHLGSLKAGSYPSRVMVDARSGFIDVG DLYADEERDFLVSVNVPAEPSRNQTSLLKVRCAYRDPLTKEMATLESEEIKLERPEISGEAIVSIEVDRQRNRFQAAEAMSRARTTAERGDLAGAASILE NCRMLLSETVSAKFHDRLCIGLDAELKEMQERMASRHVYEASGRAYILSGLSSHSWQRATVRGDSTDGSSLVQSYQTPSMTEMLARSQATFLGSPSTQRL VQPSWSFGSQPKPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.010G223766 [exp]	0	1
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Potri.010G163800 [exp]	2.23	0.7837
AT1G72010	TCP	TCP22	TCP family transcription facto...		Potri.019G081800 [exp]	3.87	0.7941
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Potri.013G042600 [exp]	6.70	0.8002	Pt-WRKY39.2
AT4G26490			Late embryogenesis abundant (L...		Potri.011G165500 [exp]	7.74	0.7911
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.007G082400 [exp]	12.72	0.7757
AT5G57970			DNA glycosylase superfamily pr...		Potri.003G182300 [exp]	13.52	0.7038
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Potri.008G057800 [exp]	15.58	0.7687
AT4G03415			Protein phosphatase 2C family ...		Potri.019G103100 [exp]	16.91	0.7685
AT5G41620			unknown protein		Potri.003G135000 [exp]	17.74	0.7114
AT5G57390	AP2_ERF	PLT5, EMK, CHO1...	PLETHORA 5, EMBRYOMAKER, CHOTT...		Potri.018G091600 [exp]	20.73	0.7965

Compare expression of checked genes

Potri.010G223766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.