Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04220 598 / 0 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G20080 501 / 2e-173 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G20990 481 / 1e-165 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT2G21010 211 / 2e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 196 / 9e-56 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 188 / 1e-52 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 175 / 2e-48 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G60950 100 / 7e-22 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT2G21040 93 / 5e-21 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61030 94 / 4e-20 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038300 [exp] 799 / 0 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.009G134200 [exp] 554 / 0 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.004G174600 [exp] 546 / 0 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.005G241700 [exp] 541 / 0 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G019800 [exp] 532 / 0 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 206 / 2e-59 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 203 / 4e-58 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 191 / 1e-53 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G150700 [exp] 155 / 3e-41 AT3G61050 624 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037993 [exp] 632 / 0 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040414 [exp] 627 / 0 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10009226 [exp] 579 / 0 AT5G04220 603 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10026515 [exp] 553 / 0 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10017268 [exp] 540 / 0 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10013563 [exp] 533 / 0 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10019782 [exp] 509 / 1e-176 AT2G20990 825 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10014127 [exp] 504 / 2e-174 AT2G20990 821 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10005069 [exp] 469 / 3e-161 AT2G20990 766 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10027842 [exp] 407 / 1e-136 AT2G20990 695 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0648 [poplar] [flax] Aha1_BPI PF17047 [poplar] [flax] SMP_LBD Synaptotagmin-like mitochondrial-lipid-binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G223900.3 pacid=42796956 polypeptide=Potri.010G223900.3.p locus=Potri.010G223900 ID=Potri.010G223900.3.v4.1 annot-version=v4.1 ATGGGATTCTTGAATGCGTTCTTGGAATTTCTTGGTTTTGGAATTGGACTTCCTTTTGGTCTCTTGATTGGTTTCTTTCTATTCGTTTATTCCAAGCCTA AAGATGTTAAGGATCCAGTGGTCAGGCCACTTCATGAGTTAGACACAGATGCTTTGCTAGATATTCTACCAGATATCCCGTTATGGGTTAAATGCCCTGA TTATGAACGAGTAGACTGGTTGAACAAGTTTCTCTTGGATATGTGGCCTTACCTTGATAAGGCAATTTGTGCAATGATAAGAAGTACAACAAAACCTATG TTTGCGGAGTATATTGGGAAGTATAAGATAGAAGCAATTGAGTTTGAGCATCTAACTCTCGGAACTCTTCCTCCTATAATTCAAGGTCTTAAAGTCTACG AAACTATGGAGAAGGATTTAGTCATGGAACCAGCAATTAGGTGGGCTGGAAATCCCAACATCGTTTTGGTGCTACAATTACTGTCTGTAAGACTTAGATT TCAGTTAGTTGATCTGCAAATATTTGCAGCGCCACGAGTAGCTTTGAAACCTCTCGTGCCTACCTTTCCATGTTTTGCAAATATTGTGGTGTCCTTGATG GAGAGGCCTCACGTAGACTTTGGACTGAAAATACTGGGAGGAGATGTTATGTCCATACCTGGCCTTTATCGATTAGTTCAGGATATGATCAAAAAACAAG TAGCGAGCCTCTACCTATGGCCCCAAACTCTCGATATACCTGTCATTGATGCCTCAACAATGGTTATAAAGAAGCCTGTGGGGATACTTCATGTGAAAGT TGTGCGCGCAAAGAAACTTTTGAAGGCTGACATCCTGGGAACTTCTGATCCATATGTGAAACTTTGCCTGACTGGAGAAAAGCTCCCGGCAAAGAAAACA ACAATCAAGAAGAAGAATCTGAATCCTGAATGGAACGAGAACTTCAAGCTTGTTGTCAAGGATCCTGAATCTCAAGCTCTTCAATTACAAGTGTTTGACT GGGACAAGGTTGGTGGTCATGACAGATTAGGAATGCAGTTTGTTCCCCTGAAAGTGCTTACCCCCCGTGAAACTAAGGAATTCACTCTTGATTTGCTTAA GCACACAAATATTTCGGACTCTCAGGACAAGAAACAACGAGGGCAAATTGTGCTGGAGCTGACCTATGTGCCTTTCAGAGAAGACAGTATCGAGTTTAGT GGACCTTTGGATGGAAATGATAGAAGGGGAAGTGCAAGTGGTAGGTCTTCTTCAGGTGACGAATCATTGAGTGGAGCAGGTTTGCTCTCAGTCATTGTTC AAGGAGCTGAGGACGTAGAAGGGAAGCATCACATTAATCCGTATGCTTTAGTCCATTTCAGAGGAGAAAGGAAGAGAACTAAGATGATTAAAAAGACTCG CGATCCACGCTGGAACGAAGAATTCCAGTTTACTCTCGATCAACCTCCCTTGCACGAGTTGATTCGTATCGAGGTCATGAGCAAGCGGACAAGCTTTAGT TTCCGATCAAAGGAATCATTGGGGCATGTGGAAATCAATCTTGATGATGTTGTGCACAATGGACGCATCAACCAGAAATACCATCTAATTGATTCGAAGA ACGGAGTGATACATGTTGAGATTCGATGGAGTACAGTTTGA
AA sequence Show only first row Show all	>Potri.010G223900.3 pacid=42796956 polypeptide=Potri.010G223900.3.p locus=Potri.010G223900 ID=Potri.010G223900.3.v4.1 annot-version=v4.1 MGFLNAFLEFLGFGIGLPFGLLIGFFLFVYSKPKDVKDPVVRPLHELDTDALLDILPDIPLWVKCPDYERVDWLNKFLLDMWPYLDKAICAMIRSTTKPM FAEYIGKYKIEAIEFEHLTLGTLPPIIQGLKVYETMEKDLVMEPAIRWAGNPNIVLVLQLLSVRLRFQLVDLQIFAAPRVALKPLVPTFPCFANIVVSLM ERPHVDFGLKILGGDVMSIPGLYRLVQDMIKKQVASLYLWPQTLDIPVIDASTMVIKKPVGILHVKVVRAKKLLKADILGTSDPYVKLCLTGEKLPAKKT TIKKKNLNPEWNENFKLVVKDPESQALQLQVFDWDKVGGHDRLGMQFVPLKVLTPRETKEFTLDLLKHTNISDSQDKKQRGQIVLELTYVPFREDSIEFS GPLDGNDRRGSASGRSSSGDESLSGAGLLSVIVQGAEDVEGKHHINPYALVHFRGERKRTKMIKKTRDPRWNEEFQFTLDQPPLHELIRIEVMSKRTSFS FRSKESLGHVEINLDDVVHNGRINQKYHLIDSKNGVIHVEIRWSTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Potri.010G223900 [exp]	0	1
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Potri.017G088700 [exp]	1.00	0.8045
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Potri.010G027600 [exp]	5.09	0.7984
AT4G22680	MYB	ATMYB85	myb domain protein 85 (.1)		Potri.012G127700 [exp]	7.14	0.7899
AT1G21320			nucleotide binding;nucleic aci...		Potri.006G224900 [exp]	10.24	0.7497
AT2G45420	AS2	LBD18, ASL20	LOB domain-containing protein ...		Potri.002G149000 [exp]	11.18	0.7869
AT1G66120			AMP-dependent synthetase and l...		Potri.006G036200 [exp]	12.32	0.7130
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.003G183900 [exp]	13.71	0.7895
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.009G009800 [exp]	14.96	0.7738
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Potri.009G006900 [exp]	15.87	0.7040
AT2G14095			unknown protein		Potri.001G310100 [exp]	18.76	0.7367

Compare expression of checked genes

Potri.010G223900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.