Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37040 1228 / 0 PAL1, ATPAL1 PHE ammonia lyase 1 (.1) AT3G53260 1227 / 0 PAL2, ATPAL2 phenylalanine ammonia-lyase 2 (.1) AT3G10340 1203 / 0 PAL4 phenylalanine ammonia-lyase 4 (.1) AT5G04230 1055 / 0 PAL3, ATPAL3 phenyl alanine ammonia-lyase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G224100 [exp] 1448 / 0 AT3G53260 1240 / 0.0 phenylalanine ammonia-lyase 2 (.1) Potri.008G038200 [exp] 1373 / 0 AT2G37040 1213 / 0.0 PHE ammonia lyase 1 (.1) Potri.016G091100 [exp] 1244 / 0 AT2G37040 1267 / 0.0 PHE ammonia lyase 1 (.1) Potri.006G126800 [exp] 1238 / 0 AT2G37040 1269 / 0.0 PHE ammonia lyase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023531 [exp] 1244 / 0 AT2G37040 1198 / 0.0 PHE ammonia lyase 1 (.1) Lus10040416 [exp] 1241 / 0 AT2G37040 1194 / 0.0 PHE ammonia lyase 1 (.1) Lus10026518 [exp] 1222 / 0 AT2G37040 1256 / 0.0 PHE ammonia lyase 1 (.1) Lus10013805 [exp] 1219 / 0 AT2G37040 1245 / 0.0 PHE ammonia lyase 1 (.1) Lus10009220 [exp] 148 / 2e-37 AT5G03300 501 / 7e-176 adenosine kinase 2 (.1) Lus10001405 [exp] 123 / 1e-33 AT3G10340 122 / 3e-34 phenylalanine ammonia-lyase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00221 [poplar] [flax] Lyase_aromatic Aromatic amino acid lyase
Representative CDS sequence Show only first row Show all	>Potri.010G224200.1 pacid=42797904 polypeptide=Potri.010G224200.1.p locus=Potri.010G224200 ID=Potri.010G224200.1.v4.1 annot-version=v4.1 ATGGAATTTTGTCAAGATTCACGCAATGGCAATGGTTCACTAGGATTTAACACTAATGACCCTTTGAACTGGGGCATGGCGGCAGAGTCACTAAAAGGAA GCCACCTAGATGAGGTCAAGCGCATGATCGAGGAGTACAGGAAGCCTGTGGTCAGGCTAGGAGGTGAGACCCTGACCATAGGCCAGGTAACTGCAATTGC TAGCCGTGACGTTGGTGTCATGGTGGAGCTGTCAGAGGAGGCTCGAGCTGGTGTCAAAGCCAGCAGTGACTGGGTCATGGACAGCATGAGCAAGGGCACA GACAGTTATGGTGTTACTACTGGTTTTGGTGCAACCTCACATAGAAGAACCAAGCAAGGTGGAGAGCTTCAAAAGGAGCTTATAAGGTTCTTGAATGCTG GTATCTTCGGCAATGGCACGGAGTCTAGCCATACATTGCCTTGCTCAGCAACCAGGGCAGCTATGTTGGTCAGAACCAATACACTGCTTCAAGGTTATTC AGGCATAAGATTTGAGATGCTGGAAGCTATCACCAAGCTGCTCAACCACAACATCACCCCATGTTTGCCACTCAGAGGAACAATCACTGCCTCTGGTGAC CTTGTCCCGTTGTCCTACATTGCTGGGCTCTTGACAGGCAGGCCTAATTCAAAGGCAGTTGGACCCAATGGAGAGCCCCTGAGCCCTGCTGAAGCCTTTA CACAAGCTGGGATTGATGGCGGCTTTTTTGAGTTGCAGCCGAAGGAGGGTCTAGCACTAGTGAATGGTACTGCAGTGGGTTCCGGTCTAGCTTCAATGGT GCTTTTTGAGACTAATGTGTTGGCAATCCTATCAGAAGTTTTGTCAGCAATCTTTGCTGAAGTTATGCAAGGAAAACCTGAGTTTACTGATCACCTCACA CATAGATTGAAGCATCATCCTGGCCAAATTGAAGCTGCCGCCATTATGGAACATATTTTAGATGGCAGCTCCTATGTTAAAGAAGCTCAGAAGTTAAATG AGATCGATCCTCTACAAAAACCTAAAAAAGACCGATATGCTCTTCAAACATCTCCACAATGGCTAGGCCCTTTGATCGAAGTGATTAGAACATCAACGAA AATGATCGAACGAGAAATCAACTCTGTCAATGACAATCCTTTGATTGACGTGTCGAGGAATAAGGCTCTACATGGAGGGAATTTCCAGGGGACCCCTATT GGTGTTTCAATGGACAACACGCGTTTGGCCATTGCTTCAATTGGCAAACTTATGTTTGCACAGTTCTCTGAACTTGTTAACGACTTTTACAACAATGGAT TGCCTTCAAACCTCACTGGTGGCCGCAATCCAAGCTTGGATTACGGGTTCAAAGGTGCCGAAATTGCCATGGCATCTTACTGTTCGGAGCTCCAATTCCT TGCCAATCCTGTCACCAATCATGTCCAGAGTGCCGAGCAACACAACCAAGATGTCAACTCCCTGGGCTTGATTTCTTCAAGAAAAACAGCTGAAGCTGTT GACATATTGAAGCTCATGTCTACCACTTTCTTGGTTGGTCTATGCCAAGCCGTTGACCTGAGGCACATAGAGGAGAACCTGAAGAGCACAGTCAAGAACA CTGTCAGCCAAGTTGCCAAGAGAGTCTTGGCAATGGGCTTCAATGGCGAGCTTCACCCTTCACGATTCTGTGAAAAAGACTTGCTCAAGGTTGTTGACAG AGAACATGTATTTTCCTACATTGACGATCCTTGCAGTGCAACCTATCCATTAATGCAAAAGCTAAGGCAAGTACTAGTCGAGCATGCCTTGGTGAATGGC GAAAGGGAAAGGAATTCAACCACTACAATTTTGCAAAAGATCGGATCTTTTGAGGAAGAATTGAAGACCCTTTTGCCTAAAGAAGTGGAGAGTGCTAGAC TTGAAGTTGAGAATGGAAATCCAGCTATTCCAAACAGGATCAAGGAATGCAGGTCATACCCCCTGTACAAGTTTGTGAGGGAAGAATTGGGAACTAGTTT GCTAACAGGTGAGAAGGTCAAATCGCCCGGCGAGGAGTTCGACAAGGTTTTCACAGCTATCTGTGCAGGGAAGTTGATTGATCCCTTGCTGGAATGCTTG AAGGAATGGGATGGTGCTCCTCTTCCTATTTGCTAA
AA sequence Show only first row Show all	>Potri.010G224200.1 pacid=42797904 polypeptide=Potri.010G224200.1.p locus=Potri.010G224200 ID=Potri.010G224200.1.v4.1 annot-version=v4.1 MEFCQDSRNGNGSLGFNTNDPLNWGMAAESLKGSHLDEVKRMIEEYRKPVVRLGGETLTIGQVTAIASRDVGVMVELSEEARAGVKASSDWVMDSMSKGT DSYGVTTGFGATSHRRTKQGGELQKELIRFLNAGIFGNGTESSHTLPCSATRAAMLVRTNTLLQGYSGIRFEMLEAITKLLNHNITPCLPLRGTITASGD LVPLSYIAGLLTGRPNSKAVGPNGEPLSPAEAFTQAGIDGGFFELQPKEGLALVNGTAVGSGLASMVLFETNVLAILSEVLSAIFAEVMQGKPEFTDHLT HRLKHHPGQIEAAAIMEHILDGSSYVKEAQKLNEIDPLQKPKKDRYALQTSPQWLGPLIEVIRTSTKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPI GVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAV DILKLMSTTFLVGLCQAVDLRHIEENLKSTVKNTVSQVAKRVLAMGFNGELHPSRFCEKDLLKVVDREHVFSYIDDPCSATYPLMQKLRQVLVEHALVNG ERERNSTTTILQKIGSFEEELKTLLPKEVESARLEVENGNPAIPNRIKECRSYPLYKFVREELGTSLLTGEKVKSPGEEFDKVFTAICAGKLIDPLLECL KEWDGAPLPIC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.010G224200 [exp]	0	1
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Potri.003G151700 [exp]	2.00	0.9539	POPTRKOR2,KOR1.3
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.008G012400 [exp]	6.00	0.9386
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Potri.010G141600 [exp]	6.78	0.9400
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.013G157900 [exp]	7.41	0.9306	C4H2,CYP73.2
AT3G27960			Tetratricopeptide repeat (TPR)...		Potri.008G094700 [exp]	8.24	0.9382
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Potri.009G099800 [exp]	11.22	0.9282	CAM1
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G244900 [exp]	11.22	0.9233
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.001G320800 [exp]	11.40	0.9221	PtrFLA14-8,FLA14.8
AT3G23090			TPX2 (targeting protein for Xk...		Potri.010G076200 [exp]	11.74	0.9305
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.005G141300 [exp]	13.56	0.9238

Compare expression of checked genes

Potri.010G224200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.