Potri.010G224700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G04240 959 / 0 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
AT3G48430 294 / 5e-81 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
AT5G46910 200 / 9e-53 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1)
AT4G20400 161 / 8e-40 PKDM7B, JMJ14 JUMONJI 14 (.1.2)
AT1G08620 157 / 2e-38 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2)
AT2G34880 153 / 2e-37 PKDM7C, MEE27 maternal effect embryo arrest 27, Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1)
AT1G30810 150 / 9e-37 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2)
AT1G63490 150 / 3e-36 transcription factor jumonji (jmjC) domain-containing protein (.1)
AT2G38950 112 / 6e-25 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1)
AT4G06634 56 / 1e-07 C2H2ZnF zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G037800 2551 / 0 AT5G04240 997 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
Potri.015G089000 301 / 1e-82 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Potri.012G092400 291 / 1e-79 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Potri.003G096100 200 / 3e-52 AT5G46910 924 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1)
Potri.001G137700 199 / 6e-52 AT5G46910 893 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1)
Potri.013G046700 160 / 4e-39 AT1G08620 1281 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2)
Potri.019G018700 159 / 8e-39 AT1G08620 1260 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2)
Potri.003G126600 155 / 2e-37 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1)
Potri.001G440900 150 / 2e-36 AT4G20400 733 / 0.0 JUMONJI 14 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037989 1087 / 0 AT5G04240 988 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
Lus10009218 1078 / 0 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
Lus10019482 258 / 2e-69 AT3G48430 984 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Lus10035385 202 / 4e-53 AT5G46910 843 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1)
Lus10030988 199 / 3e-52 AT5G46910 850 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1)
Lus10043332 185 / 1e-46 AT3G48430 877 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Lus10022024 157 / 6e-38 AT3G04490 1370 / 0.0 unknown protein
Lus10042566 157 / 7e-38 AT3G04490 1382 / 0.0 unknown protein
Lus10008495 155 / 2e-37 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1)
Lus10008063 152 / 7e-37 AT1G30810 901 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF02373 JmjC JmjC domain, hydroxylase
CL0029 Cupin PF02375 JmjN jmjN domain
Representative CDS sequence
>Potri.010G224700.2 pacid=42797226 polypeptide=Potri.010G224700.2.p locus=Potri.010G224700 ID=Potri.010G224700.2.v4.1 annot-version=v4.1
ATGGGTAACGTGGAAATACCCGAATGGTTAAAAGGGTTGCCTTTAGCACCTGAGTTTAGGCCAACTGATACTGAATTTGCAGACCCAATTGCTTACATAT
CGAAAATTGAGAAGGAAGCTAGTGCTTTTGGGATTTGTAAGATCATACCTCCATTGCCTAAACCTTCGAAAAGATATGTTTTCAGTAACTTGAATAAGGC
GCTGTCTAAGTGTCCGGAATTGGGTGATGATGTGGACTTGTCGAATGGTGTTTTAAGGGATGGTGGTAATGATGGGGAGAATAGGGCGGTGTTTACTACT
AGGCAGCAGGAGTTAGGGCAAAGTGCGAAGAAAGCAAAAGGGGTGGATAAGGAGAATCCCCAATCGGGTGTTCATCAGCAAGTTTGGCAAAGTGGCGAGG
TTTATACGTTGGAACAGTTTGAGTCTAAGTCTAAGGCTTTTGCGAGGAGTTTGTTGGGTATTATTAAGGAGGTTAATCCATTGGCTGTGGAGGCATTGTT
TTGGAAGGCAGCTTCTGAGAAGCCTATCTATGTGGAATATGCAAATGATGTGCCTGGTTCAGGATTTGGGGAACCCGAAGGTCACTTTCGATATTTTCAA
AGACGGAGGAGGAAGAGGGCATCGTATCAGTCTTATCGCCGGAGTAGAGAAATCCCTGTTTGCCGGGAAAATGATATGGATGGTGTAAAGAATTCCCATA
ATGACGATGTTACTGTTAAGAATGAGCCAAGCATGTGTTTGAAGATGACACCGAGGTCATCTATGGCATCCGCAACTCCTTCTGCAGAGGATAGTTTGAA
GTCTTCTAAGCAAAAGAGTGTAGCTGCATCTAATGATATGGAAGGTACTGCAGGCTGGAAGCTTTCAAATAGCCCTTGGAATCTGCAAGTGATTGCTCGC
TCACCTGGCTCACTTACTCGTTTTATGCCAGATGATATCCCAGGTGTTACTTCTCCTATGGTCTATATTGGTATGTTGTTTAGTTGGTTTGCTTGGCATG
TTGAGGATCATGAGCTTCACAGCATGAATTTTCTACATATTGGTTCTCCAAAGACTTGGTATGCTGTCCCTGGAGATTATGTATTTGCTTTTGAGGAAGT
TATACGCACTAAGGCTTATGGTGGCAATATTGATCGACTAGCTGCCCTGAGTCTGTTGGGTGAGAAGACAACCCTTCTGTCTCCTGAAGCAATTATTTCC
TCAGGCATTCCTTGTTGTAGGTTAGTACAGAATCCTGGTGAATTTGTTGTGACTTTTCCAAGGGCCTACCATGTAGGATTCAGCCATGGTTTTAACTGTG
GGGAAGCTGCCAACTTTGGAACTCCACAATGGCTTAAAGTAGCTAAGGAAGCTGCAGTCCGTAGAGCTGCCATGAACTATCTTCCCATGCTTTCTCATCA
GCAGCTTCTATACCTGCTGACCATGTCTTTTGTTTCCAGAGTGCCAAGATCCTTACTACCAGGCGCTCGGAGTTCTCGTCTTAGAGATCGTCAGAGAGAA
GAAAGAGAGTTGTCAGTAAAGAAGGCTTTTCTAGAAGACATGTTAAAGGAAAATGATGTTTTATCTGCTTTTCTTGAGAAAAATTCCACTTGTCATGTGG
TGATATGGAACCCTGATTTGCTTCCTTGTGCAAGTAAAGAGTCTCAATTACTCAGCATAACTTCTACTATCACTACTACATCAAATGAAAATGCTTCCCA
TGTTCATTCTGACTTAAATAGTAATAGTAATGAGAATGATCTGTTTAAGGAGATGAGCTTGTATATGGAAACTCTCAATGATTTATACATGGAAGATGAT
TTATCGTGTGATTTTCAAGTTGATTCGGGGACATTAGCATGTGTGGCATGTGGAATCCTTGGTTTTCCATTTATGTCCGTTGTACAACCTTCGGAGAGAG
CATTTATAGAACTTACACCTGGGGATTATCTTTTGGCTCAAGAAGAGCCAGGAGTTACAAGAAGCGATAATGTTCAGCCCTCTTCAAACCCTGATATCTC
TGTTAAAGGCTCCATTCCAGATGATCATGCTCCTGTGAGTGATCTTTCTGTGTCCCTGAAGGATCTTCCAGCGCCAACAGGGTGGAACACTTCTCGTAAG
TTTTTGAGACCTCGTATTTTCTGCCTGGAGCATGGTGTCCAAATTGAGGAGCTGTTACAGTCTAAAGGTGGAGCAAACATGCTTATAATTTGCCATTCAG
ACTATCAAAAGATAAAAGCTCATGCTTTTGCCATCGCGGAGGAAATTGAGAATCCTTTCAATTATAACGAGGTTCCTTTGGAAGCTGCATCCCAAGAAAA
TCTGAACTTGATAAATCTTGCAATCGATGATGAAGATCATCATGAATGTGGAGAAGATTGGACATCGAAACTGGGTATCAACTTACGGTATTGTGTAAAG
ATCAGAAAGAACTCTCCATCTAAGAAAGTTCAACATGCATTAGCATTGGGAGGATTATTCTCTGACAGAAGTCTCAGTTCAGATTTCTTAAACATCAAAT
GGCAATCTAGAAGATCTCGGTCAAGAATCAAGTTCAATCAGCCTGTCAATTGTAAACCATGCAAGATTATGGAAACAAACAAAGATGAATTGTTGGGGAA
TAAGTCAGATGGTCTCACTGACAAAAAAGAAAAAAAACTTATTCATTACACAAGAAGGAAGTACAAGGTAAAAATAGATTATTCCACAAATGGGCTTCGA
AGATGCTCTAGAAGGTGCTTGGCAGAAGAAGTTTCAGGAGCTAGTGGTGATGATCCTGATAAGCATGCTGAACAAACTACTGTGATTTACCCTTGCAACA
TTGGGATTACCGGAAGTGGTTCTGCAGCATTTGGTTTTTCTCCCATTGAAGATTCTGAAATGCTGCATGAGGTCCAGGTGCTGGAAGCAGCTAGTGGTTT
GACCTTGAATTCTGCTCCTTCACAAATTGCAGGTTCAATTCTCACTGCTACCATGGCTGTCGAAAGTGTTGCGGGGCAGATTGAGGATCAATTGCTGGAG
GAATCAAACACCGAGAGGAACATTTGTAATGTAAAAGCCAGTGGTAGTTGTGAGATAGAGCATGAGATAAATGCCTCAGGAGGAACCAGTGAAAGACAGG
ATTTTTGCACCGCAAAATGCTGCAGTCCATTTGACACTGCAGCTAATGAAAGATTTGAAATGCAGATAGAGGATCAAATTATGGGAAATGTCAACATTAT
GAGTGAGACTTGTGATTTGGTTTCAGAAGGACAACAAAGGATCCTGTATGATGATGATGATGCTTCAATGCATGAGGTTTCTGATCTTGCTAACTCAGCA
AGTTTACATGTTTCTCACCTCCCTGTCGCACAAATGGCGAATGTAGTTGTGGAGAATTCATCCATTAACAATGAGGTTTCTCCTCCTGTGACTTTGGATA
ATGAAGTGCAGAGAGAGATCGAGACTAAAAGCAGAACCAATGGTGACCAATGCTCTTCAAGTGATGACACACTGATGAATCAACCTCCTACCACACCGGA
TGAAAGATGTGATCATGAGCAAGAGACCTGTGCAGCAGAAAATAAGATGCAGCAAGAAACTGAAATCACAAATGGGAGTAATGAGGAACTGGTTCTAAGT
GATGTTATTAGTGGGCCTAATATTGTTCCTATGGATGAAAGTTCTGAATTTCATAGAGAGCCGCATGCTGCAGTCAACTTGTGCAATGGTGTGGCTTTTG
AAAGTGGGGAGCAGCTGGTTTTTCTGACTACAAATGATTCTAACAAGGAACTTACTTCATGTTCTGGTACACAAATGGAAATAAATCCATCTACTGCGTC
ACCAGAATTCTCTAAACTAAATAGGCAGGACTCTGCTGAAAATGACTTGTGCAGTGGTTCTACTTTAGGCACTGTTGTACCACTAGAAATTCCAACTACA
GACATAAGCACTGTGGAGGAATTTGCCCCTAATTCTGCAACCAAAAACCAAGTACTTGCTGAAGCTTCAAGAGAGATCTGTGTTATTCAAGACTTGTATT
CTTGTATGGATTTAGAACCTGAAGTAGAGCAGGAAATTCAGTCCAATGATGGGGTGATTGGAGACAGTGTAGCACAGAAAATGCACGAGAGTTCAAGTTC
TATTAACGAAGACAGACCTGTGTCTACTTGTGTTATTCTGGTAAATCAGCCTACTCCTTCCTCAGTTAAAAAATGTTGTGACATTGAATACAAATCTTGT
GGTGGAGAAAGTGTGGTAAAATGCAATGAAGTTTGTTCATCTCAGGAGATTGAGAGCATTGAGTCCACTGTGGTAGACTTTAGATCAAATGCTGGAAAGG
GCAGAAAAAGAAAGGGTGAAGTGGAGCAGCCAACAGAAAACAAGCTCAATAGCAATGGCTTCATCAGGAGTCCATGCGAAGGATTGAGACCAAGGGCAGG
GAAAGATGCAACATGTAAGAGTGAGGTTGATGTTGGAAAATCAGCTGAGGAGAATCCAGTAACAAAGAGGTCAAGGAAACCTTCTGATGCTTCAGTTCCT
CGCCCAAAAAGGAAAGAAATCACAAAGAGATCTCACAAGTGTAATCTAGAAGGTTGCCGCATGAGTTTTGAGACAAAGACAGAGTTACAGTTGCACAAGC
GCAACCGATGCACATATGATGGATGTGGTAAGAAGTTTCGTTCCCACAAATATGCAATAGTTCATCAACGTGTTCATGAAGATGATAGACCGCTCAAGTG
TCCATGGAAGGGTTGCTCCATGTCGTTCAAGTGGGCATGGGCCAGGATTGAGCATATTCGGGTGCACACTGGTGAGAAGCCATACCTGTGCAAGGTTGAA
GGCTGTGGCCTTTCTTTCAGGTTTGTATCAGACTTCAGTCGGCACAGGAGGAAAACAGGACACTATTCAAACACACCTGCATGA
AA sequence
>Potri.010G224700.2 pacid=42797226 polypeptide=Potri.010G224700.2.p locus=Potri.010G224700 ID=Potri.010G224700.2.v4.1 annot-version=v4.1
MGNVEIPEWLKGLPLAPEFRPTDTEFADPIAYISKIEKEASAFGICKIIPPLPKPSKRYVFSNLNKALSKCPELGDDVDLSNGVLRDGGNDGENRAVFTT
RQQELGQSAKKAKGVDKENPQSGVHQQVWQSGEVYTLEQFESKSKAFARSLLGIIKEVNPLAVEALFWKAASEKPIYVEYANDVPGSGFGEPEGHFRYFQ
RRRRKRASYQSYRRSREIPVCRENDMDGVKNSHNDDVTVKNEPSMCLKMTPRSSMASATPSAEDSLKSSKQKSVAASNDMEGTAGWKLSNSPWNLQVIAR
SPGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHIGSPKTWYAVPGDYVFAFEEVIRTKAYGGNIDRLAALSLLGEKTTLLSPEAIIS
SGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLKVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFVSRVPRSLLPGARSSRLRDRQRE
ERELSVKKAFLEDMLKENDVLSAFLEKNSTCHVVIWNPDLLPCASKESQLLSITSTITTTSNENASHVHSDLNSNSNENDLFKEMSLYMETLNDLYMEDD
LSCDFQVDSGTLACVACGILGFPFMSVVQPSERAFIELTPGDYLLAQEEPGVTRSDNVQPSSNPDISVKGSIPDDHAPVSDLSVSLKDLPAPTGWNTSRK
FLRPRIFCLEHGVQIEELLQSKGGANMLIICHSDYQKIKAHAFAIAEEIENPFNYNEVPLEAASQENLNLINLAIDDEDHHECGEDWTSKLGINLRYCVK
IRKNSPSKKVQHALALGGLFSDRSLSSDFLNIKWQSRRSRSRIKFNQPVNCKPCKIMETNKDELLGNKSDGLTDKKEKKLIHYTRRKYKVKIDYSTNGLR
RCSRRCLAEEVSGASGDDPDKHAEQTTVIYPCNIGITGSGSAAFGFSPIEDSEMLHEVQVLEAASGLTLNSAPSQIAGSILTATMAVESVAGQIEDQLLE
ESNTERNICNVKASGSCEIEHEINASGGTSERQDFCTAKCCSPFDTAANERFEMQIEDQIMGNVNIMSETCDLVSEGQQRILYDDDDASMHEVSDLANSA
SLHVSHLPVAQMANVVVENSSINNEVSPPVTLDNEVQREIETKSRTNGDQCSSSDDTLMNQPPTTPDERCDHEQETCAAENKMQQETEITNGSNEELVLS
DVISGPNIVPMDESSEFHREPHAAVNLCNGVAFESGEQLVFLTTNDSNKELTSCSGTQMEINPSTASPEFSKLNRQDSAENDLCSGSTLGTVVPLEIPTT
DISTVEEFAPNSATKNQVLAEASREICVIQDLYSCMDLEPEVEQEIQSNDGVIGDSVAQKMHESSSSINEDRPVSTCVILVNQPTPSSVKKCCDIEYKSC
GGESVVKCNEVCSSQEIESIESTVVDFRSNAGKGRKRKGEVEQPTENKLNSNGFIRSPCEGLRPRAGKDATCKSEVDVGKSAEENPVTKRSRKPSDASVP
RPKRKEITKRSHKCNLEGCRMSFETKTELQLHKRNRCTYDGCGKKFRSHKYAIVHQRVHEDDRPLKCPWKGCSMSFKWAWARIEHIRVHTGEKPYLCKVE
GCGLSFRFVSDFSRHRRKTGHYSNTPA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G04240 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger... Potri.010G224700 0 1
AT1G17680 tetratricopeptide repeat (TPR)... Potri.013G128900 7.14 0.7719
AT1G33420 RING/FYVE/PHD zinc finger supe... Potri.018G137000 11.48 0.7047
AT4G10930 unknown protein Potri.001G089900 12.44 0.7334
AT1G67310 CAMTA Calmodulin-binding transcripti... Potri.001G057800 14.42 0.7562
AT1G74160 unknown protein Potri.012G061900 14.49 0.7026
AT2G35050 Protein kinase superfamily pro... Potri.003G110000 19.13 0.7429
AT2G39930 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLAS... Potri.006G070800 22.64 0.6967
AT1G73460 Protein kinase superfamily pro... Potri.015G033400 29.08 0.6992
AT4G37460 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetr... Potri.007G052200 30.85 0.6844
AT4G30110 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE... Potri.006G076900 34.24 0.6870

Potri.010G224700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.