Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39020 303 / 7e-105 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G39030 276 / 1e-94 NATA1 N-acetyltransferase activity 1, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G037700 [exp] 423 / 2e-152 AT2G39020 301 / 2e-104 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.008G037600 [exp] 309 / 3e-107 AT2G39020 273 / 6e-93 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023533 [exp] 329 / 3e-114 AT2G39020 315 / 8e-109 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10040418 [exp] 326 / 7e-114 AT2G39020 308 / 4e-107 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [poplar] [flax] Acetyltrans PF00583 [poplar] [flax] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Potri.010G224800.1 pacid=42799902 polypeptide=Potri.010G224800.1.p locus=Potri.010G224800 ID=Potri.010G224800.1.v4.1 annot-version=v4.1 ATGGCAGCAGCAGCACCGCCGCCACCACCAACCCCTGCGCCTTCCGCCCCTACAGGCCTCCCAGACTCTGACTCAACACCAGTAGGCCACCCTCTCTTCT CCCGGATCCGCTTAGCAACACCACTGGACGTACCTAACATCCAAAAACTCATCCACCAAATGGCCATCTTTGAAAAGCTAACCCACCTTTTCACTGCCAC AGAATCCGACCTAGCCTCTACCCTATTCAAGTCTCCACCTTTCCACTCTTTCACCATCTTCCTTCTTGAAGTCTCCTCACGCCCTTTTGAAAAAGACTCG AACTTGCACTCTCAAAACTTCACTCCCATTGAAAGAATCATCAATCTTGATCATTCTTTAAGTGACCCAGAAGCTGAAACATTCAGAAATGGGATCAATG GAGATGCTGTGGTTGCTGGGTTTGTTTTGTTTTTTCCAAACTACTCAACTTTTTTGGGGAAACCAGGGTTTTATGTGGAGGATTTGTTCGTGAGAGAGTG CTATAGGAGAAAGGGACTCGGGAAGATGTTGCTTTCTGCTGTGGCTTCACAGGCTGTGAAAATGGGGTATGGTAGGGTGGAATGGGTGGTTCTTGACTGG AATGTTAATGCCATCAAGTTTTATGAGGAAATGGGTGCTAATGTTTTGCCTGAATGGAGGATTTGCAGGATTACTGGCCCTGCTCTTGAGGCTTATCGTG ATGCTATTTGA
AA sequence Show only first row Show all	>Potri.010G224800.1 pacid=42799902 polypeptide=Potri.010G224800.1.p locus=Potri.010G224800 ID=Potri.010G224800.1.v4.1 annot-version=v4.1 MAAAAPPPPPTPAPSAPTGLPDSDSTPVGHPLFSRIRLATPLDVPNIQKLIHQMAIFEKLTHLFTATESDLASTLFKSPPFHSFTIFLLEVSSRPFEKDS NLHSQNFTPIERIINLDHSLSDPEAETFRNGINGDAVVAGFVLFFPNYSTFLGKPGFYVEDLFVRECYRRKGLGKMLLSAVASQAVKMGYGRVEWVVLDW NVNAIKFYEEMGANVLPEWRICRITGPALEAYRDAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39020			Acyl-CoA N-acyltransferases (N...		Potri.010G224800 [exp]	0	1
AT5G50360			unknown protein		Potri.012G094400 [exp]	2.64	0.8525
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.009G037300 [exp]	5.09	0.8384
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Potri.008G096500 [exp]	5.74	0.6888
AT1G60420			DC1 domain-containing protein ...		Potri.005G244700 [exp]	6.92	0.8104
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Potri.016G046350 [exp]	7.74	0.8290
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Potri.014G028200 [exp]	8.36	0.8076	Pt-ABF2.1
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Potri.012G002700 [exp]	8.66	0.8210
					Potri.015G131300 [exp]	10.00	0.7238
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.015G018800 [exp]	10.00	0.7703
AT3G16990			Haem oxygenase-like, multi-hel...		Potri.008G106600 [exp]	10.72	0.7169	Pt-PM36.1

Compare expression of checked genes

Potri.010G224800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.