Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57120 415 / 1e-142 Protein kinase superfamily protein (.1) AT1G51940 162 / 6e-44 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 129 / 3e-32 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT5G48740 129 / 5e-32 Leucine-rich repeat protein kinase family protein (.1) AT2G19190 125 / 7e-31 FRK1 FLG22-induced receptor-like kinase 1 (.1) AT1G52290 124 / 8e-31 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT4G29990 124 / 3e-30 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G33580 122 / 5e-30 Protein kinase superfamily protein (.1) AT2G19230 122 / 2e-29 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G09440 118 / 7e-29 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G037501 [exp] 617 / 0 AT3G57120 411 / 3e-141 Protein kinase superfamily protein (.1) Potri.008G037401 [exp] 574 / 0 AT3G57120 371 / 2e-125 Protein kinase superfamily protein (.1) Potri.009G009600 [exp] 407 / 6e-140 AT3G57120 444 / 6e-154 Protein kinase superfamily protein (.1) Potri.001G190200 [exp] 169 / 3e-46 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G081601 [exp] 155 / 1e-41 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 152 / 1e-40 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G187500 [exp] 144 / 2e-37 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 138 / 2e-35 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G156400 [exp] 134 / 6e-34 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038716 [exp] 492 / 3e-172 AT3G57120 407 / 1e-138 Protein kinase superfamily protein (.1) Lus10016113 [exp] 376 / 4e-126 AT3G57120 447 / 8e-154 Protein kinase superfamily protein (.1) Lus10021451 [exp] 206 / 4e-64 AT3G57120 259 / 4e-85 Protein kinase superfamily protein (.1) Lus10027054 [exp] 185 / 4e-54 AT3G57120 213 / 2e-64 Protein kinase superfamily protein (.1) Lus10011518 [exp] 166 / 2e-46 AT3G57120 173 / 6e-49 Protein kinase superfamily protein (.1) Lus10006841 [exp] 168 / 8e-46 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10011517 [exp] 163 / 2e-45 AT3G57120 182 / 2e-52 Protein kinase superfamily protein (.1) Lus10037586 [exp] 166 / 6e-45 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10004625 [exp] 144 / 2e-37 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10026689 [exp] 142 / 9e-37 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.010G224900.1 pacid=42797744 polypeptide=Potri.010G224900.1.p locus=Potri.010G224900 ID=Potri.010G224900.1.v4.1 annot-version=v4.1 ATGGTTCTATACTTCTATCAGCCTGTTATAGTTATTTTATGTCCTTCCCATTCTTTCCTCATGTGCAAATCAAAAAAGAGCACCAGCATCATCGATTCTA CAACCCCAAAATCCATGGCTTCCAAATCCTTAAAATCATCGACTTCATCTTTTGTAAACACATCATCATCTCACAACTACCCATCAACAAATTACACTCC AAACTACTCAACAACATCAAAGTCCTGGTCTTTTTCAAACAAAACTTCTCTTTCTAGCCTTAGAGATTCATTACCAGAAAACCCTCACATTTATGACTTC TCTGAAATATGCAAAGCTACAAATAACTTCTTACAGAAACCCTTTTCTTCTTCCTCTTCATCAACCTCTTGGAGATGTTCAATTCGTGGAAAAGAAGTGA TTCTTTTTCAACGGAAATCTCGCCATCAGATTGGATTACCTGAGCTTCAAGAGAGGTTGCTGACCATTTGCAGGAGTCATCACAGTAGTTTGGTCAAGCT TCTTGGTGCATCCACTTCAGGGAATTATATTTATCTCGTTTATGAATATGTTCATGGTGCAAATTTAGCTACTTGTCTTAGAAATCCACAGAATCCCAGT TACACAGTTTTGTCATCTTGGTTATCACGTATGAAGGTCGCTACTGATTTAGCTCATGGTCTTGATTATATTCATCATTGTTTAGGTCTGAATTCAGAAT ATGTGCACAATCATGTAAAAAGTTATAGTATTTTAGTTACTGAAGATTCTTTAAATGCCAAGATTTGTCATTTTGGGACTGCTGAATTGTGTGGAGAGAT AGTGGGGAATGAAAGGTCTTCGGCCAAAAGTTTTGGAAGGTTGGATAGTAGGGTAATGAAAATCGAGGGAACAAGAGGGTATATGGCGCCTGAGTCTCAA TCAATTGGAGGTAAGACACAGAAAGGTGATGTTTATGCATTTGGGGTGGTGATTTTAGAGTTGGTATCTGGGGAGGAGGCATTGAGGTATGTGTTTGACG AGGGGGGTGGAGGGTATAAGAGAATCAGTGTAATTGAGAGGGCAAGGGAGGTGGTGGCTGTTGGTGGGGGTGAGTTGAGAAAGTGGGTTGATAAGAGGGT GAAGGATTCGTATCCAGTTGAAGTCGCAGAGAAGATAGTGTTGTTGGGATTGGAGTGTGTGGATGATGATCCTGAGAACAGGCCCGATATGGGGCAGGTT GAGGTTAGAGTCTCTAAATTGTATTTGGAGTCAAAGAATTGGGCTGAAAAGATTGGTTTGCCTACTGATTTCTCAGTCTCAATGGCACCTCGATGA
AA sequence Show only first row Show all	>Potri.010G224900.1 pacid=42797744 polypeptide=Potri.010G224900.1.p locus=Potri.010G224900 ID=Potri.010G224900.1.v4.1 annot-version=v4.1 MVLYFYQPVIVILCPSHSFLMCKSKKSTSIIDSTTPKSMASKSLKSSTSSFVNTSSSHNYPSTNYTPNYSTTSKSWSFSNKTSLSSLRDSLPENPHIYDF SEICKATNNFLQKPFSSSSSSTSWRCSIRGKEVILFQRKSRHQIGLPELQERLLTICRSHHSSLVKLLGASTSGNYIYLVYEYVHGANLATCLRNPQNPS YTVLSSWLSRMKVATDLAHGLDYIHHCLGLNSEYVHNHVKSYSILVTEDSLNAKICHFGTAELCGEIVGNERSSAKSFGRLDSRVMKIEGTRGYMAPESQ SIGGKTQKGDVYAFGVVILELVSGEEALRYVFDEGGGGYKRISVIERAREVVAVGGGELRKWVDKRVKDSYPVEVAEKIVLLGLECVDDDPENRPDMGQV EVRVSKLYLESKNWAEKIGLPTDFSVSMAPR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57120			Protein kinase superfamily pro...		Potri.010G224900 [exp]	0	1
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.011G005300 [exp]	5.29	0.7085
AT5G57850			D-aminoacid aminotransferase-l...		Potri.011G115000 [exp]	29.39	0.6564
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Potri.004G161200 [exp]	32.61	0.5853
AT3G59080			Eukaryotic aspartyl protease f...		Potri.005G204600 [exp]	34.20	0.6637
AT2G22620			Rhamnogalacturonate lyase fami...		Potri.006G218500 [exp]	43.05	0.6173
					Potri.009G094450 [exp]	63.37	0.4929
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Potri.003G125800 [exp]	63.71	0.5363	ATGSTT1.2
					Potri.013G045454 [exp]	66.63	0.6042
AT3G22060			Receptor-like protein kinase-r...		Potri.017G039966 [exp]	67.15	0.5426
					Potri.005G084100 [exp]	77.62	0.5781

Compare expression of checked genes

Potri.010G224900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.