Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18750 387 / 4e-132 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT1G49160 374 / 6e-127 WNK7 Protein kinase superfamily protein (.1.2) AT5G41990 373 / 1e-126 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 365 / 5e-124 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1) AT5G28080 348 / 7e-118 WNK9 Protein kinase superfamily protein (.1.2) AT3G04910 349 / 1e-115 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT3G48260 343 / 1e-115 WNK3 with no lysine (K) kinase 3 (.1) AT3G22420 330 / 9e-110 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT5G55560 308 / 2e-104 Protein kinase superfamily protein (.1) AT3G51630 314 / 7e-104 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G037200 [exp] 542 / 0 AT5G41990 429 / 8e-145 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.003G145300 [exp] 431 / 4e-149 AT5G41990 609 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.001G085500 [exp] 424 / 3e-146 AT5G41990 606 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.005G057300 [exp] 378 / 3e-127 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G101500 [exp] 362 / 1e-120 AT3G18750 564 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Potri.005G049800 [exp] 352 / 1e-116 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.013G036300 [exp] 346 / 3e-114 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.008G152300 [exp] 337 / 1e-110 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 336 / 3e-110 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017318 [exp] 427 / 1e-147 AT5G41990 589 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10003215 [exp] 428 / 5e-145 AT5G41990 585 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10033225 [exp] 415 / 1e-142 AT5G41990 620 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10000334 [exp] 401 / 6e-134 AT5G41990 597 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10030229 [exp] 382 / 3e-128 AT3G18750 561 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10005983 [exp] 352 / 5e-116 AT3G18750 523 / 3e-178 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10020236 [exp] 348 / 2e-115 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10001789 [exp] 347 / 6e-115 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10010547 [exp] 336 / 7e-111 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10004904 [exp] 332 / 2e-109 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.010G225000.1 pacid=42799040 polypeptide=Potri.010G225000.1.p locus=Potri.010G225000 ID=Potri.010G225000.1.v4.1 annot-version=v4.1 ATGGATTTAGGTTCATGTGAAAATAGCGATGATCATCAGTTCCTGGAGAAAGATCCTACAGGTCGGTTCGTTAGGTCTGATGAGATCCTGGGAGGAGGAG TGGTCAAGACTGCATATAGGGCTTTCGATGAAGTTGATGGAGTTGAAGTTGCATGGAAACAAGTAAACGTCGAGCATGTATCACCAAAACAACTAGAGAG ATTGACCACTGAGGCTCGCTTATTGAAGTCGTTGAAAGATAAGAACATCATCAAGATTTATGATTTTTGGATCGATGATGAGAAGAAAACTCTTAACATG ATTACTGAGATATTCGTTTCTGGGAGTTTGAGTCAGTATTGCAAGAAACACAAGGGTGTTAATGCGAAGGCTGTTAAGAACTGGGCAAGGCAGATTCTTC GAGGTTTGCACTATTTACATACTCATGAACCTCCTATCATTCATGGCGATTTGAGATGCGATAACATATTTGTTAATGGAAACAATGGAGAGGTTAAGAT TGGAGATCTTGGATTAGCCATTGTTATGCAACGCCCTACTGGTTTATGTGATTTAGGTACTCCAGCATATATGGCTCCTGATCAGCTTTGTGAAGAGGAA TACAATGAGCTTGTCGATGTATATTCCTTCGGCATGTGCATGTTAGAGATGGTTACTCGTGAATATCCATGTTGTGAATGCAAAAATCCAGGGCAGATAT ATAAGAAGGTTATCTCAGGCGTGAAGCCGGCTTCCCTTGATAAGGTGAATGATCCCCAAGTTAAACAGTTCATAGAGAAGTGCCTAGTTCCAGCCTCTTT GAGATTGTCGGCGATAGAGCTTTTGAAAGATCCATTCCTAGCAACTGAAAATTCAAAAGATACTGTCTCTAGTTCTATGAAGTTACCCAATAATCTCATG CCCAAGCAAGTGATCAGCTTGCCACTTGCAGAATCCCATTGA
AA sequence Show only first row Show all	>Potri.010G225000.1 pacid=42799040 polypeptide=Potri.010G225000.1.p locus=Potri.010G225000 ID=Potri.010G225000.1.v4.1 annot-version=v4.1 MDLGSCENSDDHQFLEKDPTGRFVRSDEILGGGVVKTAYRAFDEVDGVEVAWKQVNVEHVSPKQLERLTTEARLLKSLKDKNIIKIYDFWIDDEKKTLNM ITEIFVSGSLSQYCKKHKGVNAKAVKNWARQILRGLHYLHTHEPPIIHGDLRCDNIFVNGNNGEVKIGDLGLAIVMQRPTGLCDLGTPAYMAPDQLCEEE YNELVDVYSFGMCMLEMVTREYPCCECKNPGQIYKKVISGVKPASLDKVNDPQVKQFIEKCLVPASLRLSAIELLKDPFLATENSKDTVSSSMKLPNNLM PKQVISLPLAESH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Potri.010G225000 [exp]	0	1
					Potri.001G372750 [exp]	5.19	0.5439
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Potri.008G108500 [exp]	17.14	0.5325
					Potri.014G100650 [exp]	38.15	0.5271
					Potri.002G021150 [exp]	46.66	0.5187
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.009G021400 [exp]	47.13	0.5061
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Potri.011G077380 [exp]	61.48	0.5100
AT2G46570		LAC6	laccase 6 (.1)		Potri.014G100600 [exp]	64.57	0.5133
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Potri.003G074100 [exp]	70.22	0.4832	Pt-UFO.1
					Potri.006G126750 [exp]	80.95	0.4956
AT1G10880			Core-2/I-branching beta-1,6-N-...		Potri.013G130500 [exp]	84.40	0.4995

Compare expression of checked genes

Potri.010G225000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.