Plant FIBer expression Database

Potri.010G225100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G10350 599 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
AT5G60730 427 / 1e-148 Anion-transporting ATPase (.1)
AT1G01910 138 / 5e-37 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G037100
[exp]
739 / 0 AT3G10350 592 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Potri.014G078100
[exp]
136 / 2e-36 AT1G01910 580 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
Potri.002G152500
[exp]
135 / 4e-36 AT1G01910 590 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037982
[exp]
621 / 0 AT3G10350 620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Lus10038715
[exp]
616 / 0 AT3G10350 622 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Lus10021449
[exp]
413 / 4e-144 AT3G10350 434 / 2e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Lus10036552
[exp]
129 / 2e-33 AT1G01910 576 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
Lus10041377
[exp]
129 / 2e-33 AT1G01910 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain
Representative CDS sequence
>Potri.010G225100.1 pacid=42799387 polypeptide=Potri.010G225100.1.p locus=Potri.010G225100 ID=Potri.010G225100.1.v4.1 annot-version=v4.1
ATGGCTTCGTGTTCTCTAATTCCTCCCGCTTCTTCTTTAGTTTCATCTTCTCTATGCAAGTTATTTACTTCAAGAAACTCCATGGCTACAGTGGGTTTGC
TCTCTTTTGCACCAAAAACTTCAAGCTTTGTCCTTCTCTCTATCAAGCAAAGGGCTTATCATGAAAGTTCATTTAGAGTGAGATCAGTGGCCGCTCCAGT
GGAAGATGTTGCCGGATTTGATGATATGGTTGCTGGGACACAGCGGAAGTATTACATGCTTGGTGGGAAGGGAGGTGTAGGAAAGACGAGCTGTGCTGCT
TCACTTGCTGTGAAATTTGCAAACAGTGGACACCCCACTTTAGTGGTTTCAACTGATCCAGCACACTCCTTGAGTGATTCTTTTGCTCAGGATTTGACTG
GAGGTACACTAGTACCTGTTGAAGGACCTGAATGTCCACTGTTTGCACTTGAGATAAATCCTGACAAGGCTCGGGAAGAATTTCGTAGCGCAACTCAGAA
AAGTGGTGGAACCGGGGTCAAAGACTTCATGGAGGGCATGGGACTTGGAATGCTCGTTGAACAGTTAGGAGAGTTGAAATTGGGAGAGCTACTGGACACA
CCTCCTCCTGGTTTGGATGAAGCTATGGCAATTGCCAAAGTGATGCAGTTTCTTGAATCACAGGAATATAGTATGTTTACTCGAATAGTTTTTGATACTG
CACCCACGGGCCATACATTGCGACTTTTGTCCTTACCAGACTTCCTGGATGCATCCATTGGCAAGATATTGAAGCTTAGACAAAAAATAACTTCAGCAAC
CTCAGCTATCAAATCCGTCTTTGGCCAGGAGCAAACCACCCAACAGGATGCTGCTGACAAATTGGAGCAATTGAGGGAAAGGATGATAAAAGTGCGTGAA
CTTTTCCGTGACACAGATTCCACAGAGTTTGTCATAGTAACGATTCCCGCGGTAATGGCAATCAATGAGTCATCTAGGTTGCGTGCATCCTTGAAGAAGG
AGAATGTTCCTGTTAAGAGGCTTGTTGTCAATCAAATTCTCCCTCCATCTGCTACTGACTGCAAGTTTTGTGCAATGAAAAGAAAGGATCAATTGCGTGC
TCTTGACATGATACAGAATGATCCAGAACTCTCGAACTTGACATTGATACAGGGACCTTTAGTTGATGTAGAGATCAGAGGTGTTCCAGCCCTTAAATTT
CTCGGGGATATTATATGGAAATGA
AA sequence
>Potri.010G225100.1 pacid=42799387 polypeptide=Potri.010G225100.1.p locus=Potri.010G225100 ID=Potri.010G225100.1.v4.1 annot-version=v4.1
MASCSLIPPASSLVSSSLCKLFTSRNSMATVGLLSFAPKTSSFVLLSIKQRAYHESSFRVRSVAAPVEDVAGFDDMVAGTQRKYYMLGGKGGVGKTSCAA
SLAVKFANSGHPTLVVSTDPAHSLSDSFAQDLTGGTLVPVEGPECPLFALEINPDKAREEFRSATQKSGGTGVKDFMEGMGLGMLVEQLGELKLGELLDT
PPPGLDEAMAIAKVMQFLESQEYSMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLRQKITSATSAIKSVFGQEQTTQQDAADKLEQLRERMIKVRE
LFRDTDSTEFVIVTIPAVMAINESSRLRASLKKENVPVKRLVVNQILPPSATDCKFCAMKRKDQLRALDMIQNDPELSNLTLIQGPLVDVEIRGVPALKF
LGDIIWK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G10350 P-loop containing nucleoside t... Potri.010G225100
[exp]
0 1
AT1G49970 SVR2, NCLPP5, C... SUPPRESSOR OF VARIEGATION 2, N... Potri.009G089300
[exp]
2.44 0.9797 Pt-CLPR1.1
AT4G31390 Protein kinase superfamily pro... Potri.006G275600
[exp]
4.89 0.9644
AT1G79600 Protein kinase superfamily pro... Potri.002G000100
[exp]
5.47 0.9626
AT4G25370 Double Clp-N motif protein (.1... Potri.012G129800
[exp]
5.74 0.9689
AT3G19900 unknown protein Potri.010G169700
[exp]
6.00 0.9629
AT5G59610 Chaperone DnaJ-domain superfam... Potri.001G072700
[exp]
6.16 0.9559
AT2G44870 unknown protein Potri.004G030100
[exp]
6.16 0.9735
AT3G10970 Haloacid dehalogenase-like hyd... Potri.019G049000
[exp]
6.48 0.9554
AT5G35220 EGY1 ETHYLENE-DEPENDENT GRAVITROPIS... Potri.013G064700
[exp]
7.07 0.9676
AT1G66670 NCLPP3, NCLPP4,... CLP protease proteolytic subun... Potri.004G092100
[exp]
7.34 0.9560

Potri.010G225100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.