Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53390 1394 / 0 ABCG24 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60740 1384 / 0 ABCG28 ATP-binding cassette G28, ABC transporter family protein (.1) AT2G37010 1330 / 0 ATNAP12 non-intrinsic ABC protein 12 (.1) AT3G25620 186 / 2e-50 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT3G21090 189 / 4e-50 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G31770 187 / 1e-49 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT1G17840 184 / 2e-48 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT1G51500 183 / 5e-48 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT4G27420 179 / 6e-47 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT5G06530 174 / 3e-45 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G126100 [exp] 1432 / 0 AT2G37010 1377 / 0.0 non-intrinsic ABC protein 12 (.1) Potri.003G169000 [exp] 1424 / 0 AT5G60740 1643 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.001G058900 [exp] 1416 / 0 AT5G60740 1672 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.004G236500 [exp] 198 / 3e-53 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.003G046800 [exp] 195 / 4e-52 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.009G051300 [exp] 187 / 4e-49 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.010G131900 [exp] 186 / 9e-49 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.001G255800 [exp] 182 / 1e-47 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.011G123200 [exp] 181 / 1e-47 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038714 [exp] 1476 / 0 AT1G53390 1310 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037981 [exp] 1474 / 0 AT1G53390 1330 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016115 [exp] 1370 / 0 AT5G60740 1639 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10041325 [exp] 1311 / 0 AT5G60740 1548 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10021448 [exp] 1289 / 0 AT5G60740 1559 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10023020 [exp] 1223 / 0 AT2G37010 1484 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10023199 [exp] 887 / 0 AT2G37010 1141 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10034775 [exp] 197 / 1e-52 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033315 [exp] 190 / 2e-52 AT1G31770 551 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10035692 [exp] 188 / 6e-50 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Potri.010G225200.1 pacid=42797109 polypeptide=Potri.010G225200.1.p locus=Potri.010G225200 ID=Potri.010G225200.1.v4.1 annot-version=v4.1 ATGCCAAAAATGGGCTTAAAGAAGCTCAAAATCTGCACTTCTTGGTCAATGCTAGTCTGGGTCGTTGTAGTTTTGAGTTTACAGCATTTAGTCAGGTGTC AAGATGTGGGGGACTACAATGAAATTGACAATCCTGCAGTTCTTCCACTCATTACACAGCTTGTTTATAGCAGGATGTCAAATCTGACAGCAGTTATTAG CAGGGATATCAGCAACCGATCTACTTTCTGTATCAAAGACCCGGAAGATGATTGGAACCAGGCATTCAATTTTTCTTCCAATTTGGATTTCTTGACGAAA TGCATTCAAAAGACTGGAGGAGATATCACACGGCGGATATGCACAGCAGCAGAAATGAAATTCTACTTCAACAATTTCTTTCAGCCTTCAAGCATTGATA ATTATTTGAAACCTAACAAGAACTGCAATTTAACCTCGTGGGTTTCTGGTTGCGAGCCAGGATGGGCTTGCAGTATTGGTCCAAATCAGCCAGTTGACCT TGAAAATTCAAAGGAAATCCCTGCAAGAACTCGCAGCTGTCAGGCTTGCTGTGAAGGTTTCTTCTGTCCACATGGTCTTACCTGCATGATACCTTGCCCG CTAGGTTCTCACTGTCCACTTTCAAGACTCAATAGGGCAACTGGAGTATGTGAACCGTACAGTTATCAACTACCTCCAGGACAGCAAAACCATACCTGTG GAGGAGCAAACATATGGGCTGATGTTGGCAGTAGTAGTGAAATATTCTGTTCAGCTGGGTCATACTGTCCAACTACGGTCCAGAAAAATTCTTGCAGTAG TGGACATTACTGCAGGATGGGATCTACATCTGAGACACCCTGCTTCAAGTTGACTTCATGTAATGCAAACTCCCCAAGTCAAAATATTCATGCCTATGGG ATTATGTTAATAGCTGCTTTGACTACTCTGCTACTTATTATTTACAACTGTTCTGATCAAGTTCTCACCACTCGAGAGAGAAGATTAGCCAAATCCAGGG AAGCAGCAGCAAGAAGTGCAAGAGAAACAGCACGAGCACATCAAAGGTGGAAAGCTGCTAAAGATGCTGCTAAGAAGCATGCAAGTGGATTGCAAGCTCA TTTCTCACGAACATTTTCTCGTAAGAAATATGTCACGCATCCTGAGCAACTTAAGATTTTGGATCAAGCTAAATCTGAAATAGATGAAGATTTGTATCCT ACAAGCTCAAATGCTTCGATTACATCTCTGGCTTCACCTGCACCATCAAAAGGAAAGAAAAAGGAACCCAATGACCTTATGCAGATTATGCATGAAATTG AAGATGACCCTGGTAGCTATGAGGGGATCAGTCTTGAATTTGAAGATCCAAATACTAAGAGACATATGCCAAAGGGAAAAGAAATGAATACGCATAGCCA AATTTTCAAGTATGCATATGCTCAGATTGAGAAAGAGAAAGCTATGCAGCAACAAAACAAGGATCTCACATTCTCAGGAGTAGTTTCATTGGCCACCAAT ACCGAAATCAAGAAAAGGCCTCTAATTGAGATTTCATTCAAAGACCTAACCCTTACTTTGAAAGCCAAAAACAAGCATCTATTAAGGTGTGTAACAGGCA AAATCAAGCCTGGCCGTATTACAGCTGTAATGGGTCCATCAGGAGCTGGGAAGACAACCTTTCTTTCTGCTCTTGCAGGAAAAGCAATTGGATGCAGGAT GACTGGTTTGATTCTTATCAATGGGAAAAATGAATCCATCCACTCATATAAGAAAATTATTGGTTTTGTTCCACAAGATGATATTGTGCATGGAAACTTG ACAGTTGAAGAGAACCTCTGGTTCAGTGCACATTGCAGACTATCTGCTTTCATGCCAAAACCAGATAAAGTTCTGATTGTTGAAAGAGTTATTGAGTCTT TAGGTCTACAATCAGTACGGGACTCTATGGTAGGAACAGTGGAGAAGCGAGGAATTTCTGGAGGCCAGAGGAAGCGAGTAAATGTTGGACTGGAAATGGT CATGGAACCTTCACTTTTGATCTTAGATGAGCCCACATCTGGTCTGGACAGTGCATCCTCTCAGCTTCTTCTTAGAGCACTTCGGCGTGAAGCTCTTGAA GGGGTAAACATCTGCATGGTTGTTCACCAACCAAGCTATGCCTTGTTCAAAATGTTCGATGACTTGGTACTTCTTGCAAAAGGTGGCCTTATTGTCTATC ATGGTCCAGTGAAGAAGGTTGAAGAATACTTTGCAGGCCTTGGGATTCGTGTCCCAGAGCGTGTTAATCCTCCTGACCACTATATTGACATTTTGGAGGG TATAGTGACATCAAATGCGAGCTCAGGTGTGAATTATAAGGAACTTCCTCTTAGATGGATGCATCATAATGGATACCCCATGCCTCCAGATATGCAAAAG TATGCTGCTGGACTTGTTATGTCACCTGTGGAAGCAAATCCAGATCTGAGATCAAATCCTACTGACACTGGAATGGGGGAACAGTCTTTTGCTGGGGAAT TATGGCAAGATGTTAAGAGTAATGTGGAGTTGCATCGGGATAAGATACGACACAATTTTTTGAAGTCCAGTGATTTATCATATCGGAGAACTCCAGGAGT ATTCCAGCAATACAGATACTTCCTTGGCAGGATTTCTAAACAGAGACTAAGGGAAGCTAAAATCCAAGCAGCAGATTATCTGATCTTATTTCTTGCTGGA GCCTGCCTAGGATCAATTACAAAACCTAGCGATCAAACTTTCGGGGCTACTGGTTATGCACATTCCATTATTGCAGTTTCTCTCCTTTGCAAGATAGCGG CTTTAAGAACATTTTCTCTTGAGAAGTTACAGTACTGGAGAGAGAGTGCCTCTGGCATGAGCAGTGTAGCTTACTTTCTTGCCAAGGATACATTTGACCA TTTTAATACAGTGGTCAAGCCAGTGGTTTACCTCTCTATGTTCTATTTCTTCACCAACCCAAGATCTTCCTTCGCCGATAATTACATTGTCATGCTGTGT CTTGTCTACTGTGTAACTGGAATAGCCTATGTACTGGCCATCTTTTTTGAACCAGGTCCAGCCCAGCTGTGGTCAGTTCTTCTTCCGGTTGTTTTGACTC TCATTGCATCACAACCAAACAAAAGTGAAGTTTTGAAGTTTGTAGCCAAGCTGTGCTATCCTAATTGGGCTTTGGAAGCGTTTGTGATTGCAAATGCTGA GAGGTACTATGGAGTGTGGTTGATTACTCGTTGTGGTTCTCTAATGAAAACCGGTTATAATCTTCATTATTGGGGTCTATGTATATTCATCCTCATACTC ATAGGTCTAGTTAGTCGAGTTGTGGCATTCTTTGGGATGATAACCTTCCAAAAGAAGTGA
AA sequence Show only first row Show all	>Potri.010G225200.1 pacid=42797109 polypeptide=Potri.010G225200.1.p locus=Potri.010G225200 ID=Potri.010G225200.1.v4.1 annot-version=v4.1 MPKMGLKKLKICTSWSMLVWVVVVLSLQHLVRCQDVGDYNEIDNPAVLPLITQLVYSRMSNLTAVISRDISNRSTFCIKDPEDDWNQAFNFSSNLDFLTK CIQKTGGDITRRICTAAEMKFYFNNFFQPSSIDNYLKPNKNCNLTSWVSGCEPGWACSIGPNQPVDLENSKEIPARTRSCQACCEGFFCPHGLTCMIPCP LGSHCPLSRLNRATGVCEPYSYQLPPGQQNHTCGGANIWADVGSSSEIFCSAGSYCPTTVQKNSCSSGHYCRMGSTSETPCFKLTSCNANSPSQNIHAYG IMLIAALTTLLLIIYNCSDQVLTTRERRLAKSREAAARSARETARAHQRWKAAKDAAKKHASGLQAHFSRTFSRKKYVTHPEQLKILDQAKSEIDEDLYP TSSNASITSLASPAPSKGKKKEPNDLMQIMHEIEDDPGSYEGISLEFEDPNTKRHMPKGKEMNTHSQIFKYAYAQIEKEKAMQQQNKDLTFSGVVSLATN TEIKKRPLIEISFKDLTLTLKAKNKHLLRCVTGKIKPGRITAVMGPSGAGKTTFLSALAGKAIGCRMTGLILINGKNESIHSYKKIIGFVPQDDIVHGNL TVEENLWFSAHCRLSAFMPKPDKVLIVERVIESLGLQSVRDSMVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSQLLLRALRREALE GVNICMVVHQPSYALFKMFDDLVLLAKGGLIVYHGPVKKVEEYFAGLGIRVPERVNPPDHYIDILEGIVTSNASSGVNYKELPLRWMHHNGYPMPPDMQK YAAGLVMSPVEANPDLRSNPTDTGMGEQSFAGELWQDVKSNVELHRDKIRHNFLKSSDLSYRRTPGVFQQYRYFLGRISKQRLREAKIQAADYLILFLAG ACLGSITKPSDQTFGATGYAHSIIAVSLLCKIAALRTFSLEKLQYWRESASGMSSVAYFLAKDTFDHFNTVVKPVVYLSMFYFFTNPRSSFADNYIVMLC LVYCVTGIAYVLAIFFEPGPAQLWSVLLPVVLTLIASQPNKSEVLKFVAKLCYPNWALEAFVIANAERYYGVWLITRCGSLMKTGYNLHYWGLCIFILIL IGLVSRVVAFFGMITFQKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Potri.010G225200 [exp]	0	1
AT2G21120			Protein of unknown function (D...		Potri.001G305700 [exp]	2.44	0.7034
AT3G57630			exostosin family protein (.1.2...		Potri.006G054800 [exp]	5.91	0.7323
AT4G24350			Phosphorylase superfamily prot...		Potri.008G028700 [exp]	13.34	0.7234
AT2G23300			Leucine-rich repeat protein ki...		Potri.007G048800 [exp]	16.24	0.6522
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.016G024400 [exp]	17.97	0.6594
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Potri.008G049500 [exp]	19.62	0.6852
AT2G45910			U-box domain-containing protei...		Potri.002G160300 [exp]	20.00	0.6884
AT5G11720			Glycosyl hydrolases family 31 ...		Potri.001G442800 [exp]	20.78	0.6718
AT4G34880			Amidase family protein (.1)		Potri.009G130500 [exp]	28.39	0.6517
AT2G19940			oxidoreductases, acting on the...		Potri.004G145700 [exp]	30.75	0.6668

Compare expression of checked genes

Potri.010G225200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.