Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39110 538 / 0 Protein kinase superfamily protein (.1) AT3G09830 523 / 0 Protein kinase superfamily protein (.1.2) AT5G03320 489 / 3e-172 Protein kinase superfamily protein (.1) AT2G28940 423 / 1e-145 Protein kinase superfamily protein (.1.2) AT5G47070 334 / 2e-111 Protein kinase superfamily protein (.1) AT5G15080 333 / 3e-110 Protein kinase superfamily protein (.1) AT3G01300 330 / 6e-109 Protein kinase superfamily protein (.1) AT3G28690 325 / 1e-108 Protein kinase superfamily protein (.1.2.3) AT5G01020 308 / 3e-101 Protein kinase superfamily protein (.1) AT1G14370 307 / 7e-101 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G036800 [exp] 707 / 0 AT3G09830 537 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G126000 [exp] 531 / 0 AT3G09830 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G031500 [exp] 453 / 2e-157 AT2G28940 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G240500 [exp] 440 / 1e-152 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G052700 [exp] 380 / 5e-129 AT5G47070 431 / 2e-149 Protein kinase superfamily protein (.1) Potri.001G149100 [exp] 349 / 1e-117 AT5G47070 496 / 7e-176 Protein kinase superfamily protein (.1) Potri.003G085300 [exp] 347 / 2e-116 AT5G47070 472 / 6e-166 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 333 / 3e-110 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 330 / 4e-109 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038711 [exp] 596 / 0 AT3G09830 547 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037980 [exp] 585 / 0 AT3G09830 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016536 [exp] 414 / 1e-141 AT2G28940 576 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040804 [exp] 407 / 3e-139 AT2G28940 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026524 [exp] 338 / 2e-115 AT3G09830 342 / 2e-117 Protein kinase superfamily protein (.1.2) Lus10013812 [exp] 333 / 2e-113 AT3G09830 342 / 2e-117 Protein kinase superfamily protein (.1.2) Lus10001088 [exp] 334 / 5e-112 AT5G47070 455 / 4e-160 Protein kinase superfamily protein (.1) Lus10040135 [exp] 334 / 7e-112 AT5G47070 456 / 3e-160 Protein kinase superfamily protein (.1) Lus10030668 [exp] 330 / 7e-109 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 330 / 1e-108 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.010G225300.3 pacid=42797166 polypeptide=Potri.010G225300.3.p locus=Potri.010G225300 ID=Potri.010G225300.3.v4.1 annot-version=v4.1 ATGAAGTGTTTTCACTTCTCCAGCAGGGAGAAAAATGAAGAACCAAAGACCGTAACAAAATCCGTTTCTGTCCAATCCACTTCATCTACATCAATGTCGA TGTCAACTGATCGTGACCTGAGGAAATCCGGGTCTGAGCTCAATTCTCAGAATGTGTCAGATTTTAGCACAGAATCGTCCACAAAGAACTCATTTGCGAA CTCATTTGCTTCTTTGTGTCAAAGACAGAGCAATCTTAAAGCCTTCACATTCTCAGAACTGAAGACGGCCACCAAGAATTTCAGCCGCTCTGTAATGATT GGGGAGGGTGGATTTGGCGGTGTGTATAGGGGTGTAATACGGAGCATGGAAGATTCAAGTAAGAAAATCGATATCGCTGTCAAACAACTGAGCAGAAGAG GGCTCCAGGGGCACAAGGAATGGGTGACTGAAGTAAATGTTCTAGGAATTGTTGAACATCCAAATCTTGTCAAATTAGTGGGCTACTGTGCTGAGGACGA TGAACGGGGAATCCAGCGCCTTCTGGTATATGAATTTATGCCCAACAGAAGTGTGCAGGATCACTTGTCCAGTAAATTTCAGAAAGCTCTTCCTTGGGCC ACAAGAGTAAAAATTGCCCAGGATGCTGCCCGAGGCTTAGCATACCTCCATGAAGGAATGGATTTTCAGATTATTTTCAGAGATTTCAAGTCTTCAAACA TACTACTGGATGACCAATGGAATGCAAAGCTATCAGACTTTGGGTTGGCTAGATTGGGGCCTTCAGATGGGTTGAGCCATGTTTCAACTGCGGTGGTTGG AACTATAGGATATGCAGCTCCTGAATATATTCAAACCGGGCGTCTCACGTCTAAAAGTGATGTGTGGAGCTTTGGGGTTTTTCTTTATGAACTGATAACA GGCAGACGTCCTTTGGATCGGAACCGGCCAAAGAATGAGCAAAACCTCTTGGAATGGGTCAGGTCACACCTCTCTGATGTAAGAAAGTTCAGGTTGATCA TGGACCCAAAGCTCGAGGGAAAATATAACATCAAGGCTGCCCAAAAGCTTGCTTCTGTAGCTAACCGGTGCTTGGTACGACAGGCTAAATCACGCCCGAA AATGAGCGATATCCTGGATATGATCAACAAGATTGTTGATACAACAGACAATGGAAGCCCCTTGCCCTGCACGAAGAGTTTGGCCCCGAAAGATGCTCCT GAAGGACCTGGAAGAGAACGTATGAAAAGGAGATTTTTGGATTCAATAATTGGAGATCAGAAGGGATGCTGGTCAGCTTGGAGAACATGGAGAACTAAGC TAGTGAGGACACGCTGA
AA sequence Show only first row Show all	>Potri.010G225300.3 pacid=42797166 polypeptide=Potri.010G225300.3.p locus=Potri.010G225300 ID=Potri.010G225300.3.v4.1 annot-version=v4.1 MKCFHFSSREKNEEPKTVTKSVSVQSTSSTSMSMSTDRDLRKSGSELNSQNVSDFSTESSTKNSFANSFASLCQRQSNLKAFTFSELKTATKNFSRSVMI GEGGFGGVYRGVIRSMEDSSKKIDIAVKQLSRRGLQGHKEWVTEVNVLGIVEHPNLVKLVGYCAEDDERGIQRLLVYEFMPNRSVQDHLSSKFQKALPWA TRVKIAQDAARGLAYLHEGMDFQIIFRDFKSSNILLDDQWNAKLSDFGLARLGPSDGLSHVSTAVVGTIGYAAPEYIQTGRLTSKSDVWSFGVFLYELIT GRRPLDRNRPKNEQNLLEWVRSHLSDVRKFRLIMDPKLEGKYNIKAAQKLASVANRCLVRQAKSRPKMSDILDMINKIVDTTDNGSPLPCTKSLAPKDAP EGPGRERMKRRFLDSIIGDQKGCWSAWRTWRTKLVRTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39110			Protein kinase superfamily pro...		Potri.010G225300 [exp]	0	1
AT2G40180		ATHPP2C5	phosphatase 2C5 (.1)		Potri.008G070400 [exp]	1.41	0.7970
AT1G77810			Galactosyltransferase family p...		Potri.005G171400 [exp]	1.73	0.7785
					Potri.015G131300 [exp]	2.23	0.7643
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Potri.017G051700 [exp]	3.31	0.7972
AT5G41350			RING/U-box superfamily protein...		Potri.001G101700 [exp]	7.07	0.7430
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.008G065600 [exp]	8.66	0.7348	MDPIP1.3
AT5G06570			alpha/beta-Hydrolases superfam...		Potri.009G155800 [exp]	11.87	0.6565
AT4G24290			MAC/Perforin domain-containing...		Potri.019G001000 [exp]	13.74	0.7510
					Potri.005G172500 [exp]	14.10	0.6411
AT3G01420		PADOX-1, ALPHA-...	plant alpha dioxygenase 1, alp...		Potri.008G106400 [exp]	17.43	0.7538	Pt-PIOX.1

Compare expression of checked genes

Potri.010G225300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.