Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10360 868 / 0 APUM4 pumilio 4 (.1) AT2G29200 675 / 0 APUM1 pumilio 1 (.1) AT2G29140 674 / 0 APUM3 pumilio 3 (.1) AT2G29190 663 / 0 APUM2 pumilio 2 (.1.2) AT3G20250 460 / 3e-146 APUM5 pumilio 5 (.1) AT4G25880 408 / 1e-127 APUM6 pumilio 6 (.1.2.3) AT1G22240 198 / 2e-54 APUM8 pumilio 8 (.1) AT1G78160 194 / 4e-52 APUM7 pumilio 7 (.1) AT5G56510 179 / 3e-47 APUM12 pumilio 12 (.1) AT4G08840 160 / 3e-41 APUM11 pumilio 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G036500 [exp] 1508 / 0 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.008G058300 [exp] 756 / 0 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.010G201100 [exp] 751 / 0 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.009G034900 [exp] 743 / 0 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.001G243400 [exp] 729 / 0 AT2G29190 1071 / 0.0 pumilio 2 (.1.2) Potri.008G004300 [exp] 476 / 1e-151 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.003G009900 [exp] 453 / 3e-143 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.006G165100 [exp] 452 / 7e-143 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3) Potri.003G222300 [exp] 223 / 3e-61 AT5G56510 497 / 4e-168 pumilio 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037976 [exp] 1109 / 0 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10038706 [exp] 1092 / 0 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10002708 [exp] 737 / 0 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10040782 [exp] 716 / 0 AT2G29190 1095 / 0.0 pumilio 2 (.1.2) Lus10016513 [exp] 710 / 0 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10001567 [exp] 661 / 0 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10000516 [exp] 553 / 0 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10004976 [exp] 551 / 0 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10034808 [exp] 451 / 3e-142 AT3G20250 880 / 0.0 pumilio 5 (.1) Lus10033353 [exp] 447 / 2e-141 AT3G20250 732 / 0.0 pumilio 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00806 [poplar] [flax] PUF Pumilio-family RNA binding repeat CL0020 [poplar] [flax] PF07990 [poplar] [flax] NABP Nucleic acid binding protein NABP
Representative CDS sequence Show only first row Show all	>Potri.010G225600.4 pacid=42799915 polypeptide=Potri.010G225600.4.p locus=Potri.010G225600 ID=Potri.010G225600.4.v4.1 annot-version=v4.1 ATGGTCACTGGGGGCGGCAATATAAACAAGCCACATACAGTAGATGATTTTCAGAGCGAACTGGGATTGATTCTACAATCACAGCGATGTAATCAACGCA TAGAAAGGGATCTTGATATATATAGGAGTGGTAGTGCTCCACCCACTGTTGAAGGATCATTAAGTGCCGTGGGAAGCCTTTTTAGGAACTATAACTTGAG TGACGTCAATAGTGTTAGTAACAATGTGGTTTTGGCTGAAGATGAGATTCGCTCGCACCCATCTTATCTTTTGTATTACTATTCTCATGATAACATTAAT CCAAGATTGCCCCCACCCTTGTTGTCCAAGGAGGATTGGCTTGTTGCACAAAGGTTTCAGTCTTCTGGATCTTCATTTGGAGGTATTGGGGACTTGAGGA ATAATAAGGTGGTTGATAATAGTGATCGTTCTTCGCTGTTTTCAATGCAGCCGGGACTTTCAGTGCATAAGGTCGACAATGATTTGACAGAATTGAGGAA TTCAAATACAACTTGTCTCACTAGGAATGCTTCGGCCGAGTGGCTTGATAGAATTTCAGATAGTCATAAATTGCACGGCTCCAGGCTTGGTCCGAGGAGG AAAAGTTTTGCTGACATTCTTCAGGAAGGACTTGATCAGTCCACTTCCATACCAGGTCACCTACCATCCCCAGCAAGTCATAATGCTTTTGGTGATCTTC TGGATGCAACTGGTGTGTGTGATCCTCATCAAGCTGGGTTACTCTATGGAATGGAATCCCTTGAAGGCCTGCATTCAGGAGCAGCTACCACTAGCTTTAC AGGAAATCAAAGCCGCATTGATACCTTGTCTCACTCTTTGGTATCTGCTGTGGGTTCATCATTGTCTAGGAGTACAACACCTGAACAGCAGCTGGGTGGG ATGTCTGCTATTTCAAATCTACGTCATGTTGGCAGCAGAGTTGGTCCTATTGAGAAGAAGAATGTTGCTGGCATGAGTTTCCAAAATGATCATTCCTCTG GCATTACTGAGCTTGGTGAAATTGGCAACTCGTTGTCTGGGTTAAGCCTTTTGCACACTAGACTCACAGATCAAGAGAGTCATGTACGACATCAACTGCA AATGGATCTGGAAAATGAGCCAGATTTTCCTTTTAATGTGCCCAGTAGTGGTGACCAGACTCTGCAGCAGCAACTCAGAGAAAAATCCAACGTAGTAAAT CTCTCATTTTCGACCAGCTATACCGATATGCCAACAAACAATGGGATCATACCAAACCGTAATACTTCTAAGATAACTTCTAATGGGGAAGTTAGTATTT CCAGAAGAAATTCTTCTACCAATCTTCACTCAAAAATGAATTCCTCGGGCCTTGGATGTTTGGAAAGATCACATGTTCATATTCAAAATGCAAATGTTCC AATTGTGGATTTCACTGGCCGTGTACCTGATGATTATTCAACTCAAAAATTGAATTCGGTGATCAAGAATCATCTCGATAAAGGTGGTCATGGAATTGGG CATGGTTTTAATAGACTGGGAAATCAAGCGGGGTCTCTAGACCCATGTTATCCTCAGTACTTGCAAAGAATTTCAGATTATGCAACGTGTCCTGTAGCTA CTTCTAGTGATCCTTCAGTTAGAAACTATTTTGGCGCTTCAGATGGAGACTTGGACAGGATTCAGAAAGCTTACCTGGAGACATTGCTTGTTCAACAGAA GCAACAATATGAGTTGCCACTTCTAACCAAATCTGGTGGTTTGAATCAGGGATACCATAGGAATTCATCATATGGTCTTAGCATGCCATATCCAGAGAAC TCAGTGGCGAAATCTTCGCTTCCTTCTGTTGGATCTGGAAGTTTTCAGAGCGAGCGAGCTGCACACTTAGCTCCTATGATGAGGAATTCGATAGGAGGAT CCATTGGGTCATGGCAGTGTGATATTGGCAGCATTGCGGAAAGAAGACCCTCATCATCCTCAATAGAAGGATTTAAGAACAACAAGACCGGTTCTTTTGA ACCTTCAGACATTGCTGGTCAGGTTGTTGAATTCAGCACGGATCAATATGGAAGTCGGTTTATTCAGCAGAAACTAGAAACTGCTTCAGTTGAAGAGAAG AACAAGATCTTCCCTGAGATTATTCCTCATGCTCGTACCTTGATGACTGATGTGTTTGGAAATTATGTCATACAAAAGTTTCTTGATCATGGTACAGAAA GTCAAAGATTGGAGTTAGTCAGTCGACTTAATGGTCATGTTTTACCTCTCAGTCTTCAAATGTATGGATGCAGAGTAATCCAGAAGGCTTTGGAGATGAT TGATGTGGATCGACAGACTCAAATAGTGGTAGAGCTTAATGGCTCTGTCATTAAATGCATTCGTGATCAGAATGGCAATCATGTTATTCAGAAGTGTATA GAGTGTGTCCCGGAAGATCGAATTCAATTCATCATCTCAGCTTTCTATGGGCAAGTTTTGGCCCTATCCACCCATCCTTATGGTTGCCGTGTCATTCAGA GGGTCCTGGAGCATTGTAAGGACATGAATACACAGCAAATTATTATGGATGAAATTATGCAGTCTGTGTACACTTTGGCACAAGATCAATATGGAAATTA TGTCATTCAGCATGTTCTTGAGCATGGTAAGCCACAAGAACGATCTGCTATTATTAGCAAGCTTGCAGGACATATTGTTTTGATGAGTCAGCAGAAATTT GCTTCAAATGTTGTGGAGAAGTGCTTGACATTTGGTGGCCCTGAGGAGCGCCAACTTTTGGTGAATGAGATACTTGGTTCCACTGTTGAAAATGAGCCCT TGCAGGCTATGATGAAAGATCCATTTGGAAATTACGTTGTACAGAAGGTTCTTGAGACCTGCAATGATCGAAGTTTGGAGTTAATTATTTCTCGCATTAG GGTTCATTTGAGTGCCCTGAAGAGGTACACTTACGGTAAACATATTGTTTCGCGTGTTGAGAAGCTCATCACAACTGGAGAAAGGCGCTTAGGATTGTCA TCTCAGTCTCCTAACGTGATTTAA
AA sequence Show only first row Show all	>Potri.010G225600.4 pacid=42799915 polypeptide=Potri.010G225600.4.p locus=Potri.010G225600 ID=Potri.010G225600.4.v4.1 annot-version=v4.1 MVTGGGNINKPHTVDDFQSELGLILQSQRCNQRIERDLDIYRSGSAPPTVEGSLSAVGSLFRNYNLSDVNSVSNNVVLAEDEIRSHPSYLLYYYSHDNIN PRLPPPLLSKEDWLVAQRFQSSGSSFGGIGDLRNNKVVDNSDRSSLFSMQPGLSVHKVDNDLTELRNSNTTCLTRNASAEWLDRISDSHKLHGSRLGPRR KSFADILQEGLDQSTSIPGHLPSPASHNAFGDLLDATGVCDPHQAGLLYGMESLEGLHSGAATTSFTGNQSRIDTLSHSLVSAVGSSLSRSTTPEQQLGG MSAISNLRHVGSRVGPIEKKNVAGMSFQNDHSSGITELGEIGNSLSGLSLLHTRLTDQESHVRHQLQMDLENEPDFPFNVPSSGDQTLQQQLREKSNVVN LSFSTSYTDMPTNNGIIPNRNTSKITSNGEVSISRRNSSTNLHSKMNSSGLGCLERSHVHIQNANVPIVDFTGRVPDDYSTQKLNSVIKNHLDKGGHGIG HGFNRLGNQAGSLDPCYPQYLQRISDYATCPVATSSDPSVRNYFGASDGDLDRIQKAYLETLLVQQKQQYELPLLTKSGGLNQGYHRNSSYGLSMPYPEN SVAKSSLPSVGSGSFQSERAAHLAPMMRNSIGGSIGSWQCDIGSIAERRPSSSSIEGFKNNKTGSFEPSDIAGQVVEFSTDQYGSRFIQQKLETASVEEK NKIFPEIIPHARTLMTDVFGNYVIQKFLDHGTESQRLELVSRLNGHVLPLSLQMYGCRVIQKALEMIDVDRQTQIVVELNGSVIKCIRDQNGNHVIQKCI ECVPEDRIQFIISAFYGQVLALSTHPYGCRVIQRVLEHCKDMNTQQIIMDEIMQSVYTLAQDQYGNYVIQHVLEHGKPQERSAIISKLAGHIVLMSQQKF ASNVVEKCLTFGGPEERQLLVNEILGSTVENEPLQAMMKDPFGNYVVQKVLETCNDRSLELIISRIRVHLSALKRYTYGKHIVSRVEKLITTGERRLGLS SQSPNVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10360		APUM4	pumilio 4 (.1)		Potri.010G225600 [exp]	0	1
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Potri.019G085800 [exp]	27.44	0.6112	SUC2.1
					Potri.008G068601 [exp]	34.56	0.5995
AT3G01430			unknown protein		Potri.001G132100 [exp]	39.79	0.5220
AT5G07610			F-box family protein (.1)		Potri.018G132800 [exp]	56.92	0.5784
AT3G10360		APUM4	pumilio 4 (.1)		Potri.008G036500 [exp]	60.96	0.5844
AT3G10910			RING/U-box superfamily protein...		Potri.013G091300 [exp]	69.33	0.5857
AT5G62570			Calmodulin binding protein-lik...		Potri.015G071800 [exp]	86.23	0.5630
AT4G00090			Transducin/WD40 repeat-like su...		Potri.002G148100 [exp]	88.73	0.5224
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Potri.004G092900 [exp]	100.59	0.5269
AT2G44680		CKB4	casein kinase II beta subunit...		Potri.002G139900 [exp]	108.78	0.5242	CKB3.2

Compare expression of checked genes

Potri.010G225600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.