Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04270 296 / 3e-101 DHHC-type zinc finger family protein (.1) AT3G09320 226 / 3e-73 DHHC-type zinc finger family protein (.1) AT4G22750 87 / 8e-20 DHHC-type zinc finger family protein (.1.2) AT4G22753 87 / 6e-19 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G00840 78 / 2e-16 DHHC-type zinc finger family protein (.1) AT3G60800 75 / 3e-15 DHHC-type zinc finger family protein (.1) AT5G50020 75 / 5e-15 DHHC-type zinc finger family protein (.1.2) AT3G48760 75 / 5e-15 DHHC-type zinc finger family protein (.1) AT5G41060 71 / 6e-14 DHHC-type zinc finger family protein (.1.2) AT3G26935 71 / 1e-13 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G087400 [exp] 239 / 2e-78 AT3G09320 409 / 3e-145 DHHC-type zinc finger family protein (.1) Potri.016G100200 [exp] 234 / 1e-76 AT3G09320 426 / 5e-152 DHHC-type zinc finger family protein (.1) Potri.014G069200 [exp] 85 / 5e-19 AT3G60800 447 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.002G147300 [exp] 82 / 9e-18 AT3G60800 441 / 3e-157 DHHC-type zinc finger family protein (.1) Potri.001G117100 [exp] 77 / 2e-16 AT3G60800 365 / 6e-127 DHHC-type zinc finger family protein (.1) Potri.006G027400 [exp] 75 / 5e-15 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.001G325400 [exp] 75 / 5e-15 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.014G104000 [exp] 74 / 5e-15 AT4G00840 297 / 5e-101 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 73 / 2e-14 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038701 [exp] 379 / 2e-133 AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) Lus10037973 [exp] 290 / 2e-98 AT5G04270 207 / 1e-66 DHHC-type zinc finger family protein (.1) Lus10024377 [exp] 231 / 2e-75 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10010852 [exp] 229 / 2e-74 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10032199 [exp] 84 / 2e-18 AT3G60800 409 / 2e-144 DHHC-type zinc finger family protein (.1) Lus10024561 [exp] 84 / 2e-18 AT3G60800 411 / 2e-145 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 74 / 7e-15 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 74 / 1e-14 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 70 / 3e-13 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 70 / 3e-13 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.010G226100.4 pacid=42797927 polypeptide=Potri.010G226100.4.p locus=Potri.010G226100 ID=Potri.010G226100.4.v4.1 annot-version=v4.1 ATGGAGTGGAAGAGATTCTTGTCGATCCCAGTTTGTAGTGTGTTTCTGTTGATGGGTTTTGTTTATTACATAACAGTTTTCATATTCATTGAAGATTGGG TTGGGTTACAGAGCTCAGCTGGGACTTTGAATGCTATGATCTTCACTTTTATGGCTTCTTTATGTCTTTTCTCTTTTCTCTTCTGTGTTTTAAAAGAACC TGGTTATGTCCCTTCCCCTTATGTTCCTGATGTTGAAGGAGCTGCTGTCCCTCCACATCAAGAACCACTCAATAATAGTTCACAACTGAGGCGATGTGAC AAGTGTGTTACATACAAGCCTCCCAGGGCTCATCATTGTAGGGTCTGCAGAAGGTGTGTTTTGAGGATGGATCATCATTGTCTATGGATAAATAACTGTG TTGGTTATTGGAACTACAAGGCCTTTTTTATATTAGTTTTATATGCAACCATAGCAAGCATCTATTCTTCGGTCATGATAATCAGCTGTGCTTCTCAGAA GAACTGGAATTTCAGTGGAAGAATTCCTATGAAGATTTTTTTTGTTGTTTCTGGAGCAATGATGTTTGGCTTGAGCATAACATTTGGAACTCTTTTGGGT TGGCATATTTACCTCATGTCTTGCAATATGACAACCATTGAAAATTATGAAGGAATACGTGCAGCATGGTTGGCCAGGAAATCTGGACACAGTTATCGAC ATCCATTCAACCTTAGTGTTTACAAAAATATCACCTCGGTATTGGGTCCAAACATACTGAAATGGTTATGCCCCACAGCAGTAAGCCATCTAAAAGATGG AATGAGCTACCCAACTGCACATGATAGTTGA
AA sequence Show only first row Show all	>Potri.010G226100.4 pacid=42797927 polypeptide=Potri.010G226100.4.p locus=Potri.010G226100 ID=Potri.010G226100.4.v4.1 annot-version=v4.1 MEWKRFLSIPVCSVFLLMGFVYYITVFIFIEDWVGLQSSAGTLNAMIFTFMASLCLFSFLFCVLKEPGYVPSPYVPDVEGAAVPPHQEPLNNSSQLRRCD KCVTYKPPRAHHCRVCRRCVLRMDHHCLWINNCVGYWNYKAFFILVLYATIASIYSSVMIISCASQKNWNFSGRIPMKIFFVVSGAMMFGLSITFGTLLG WHIYLMSCNMTTIENYEGIRAAWLARKSGHSYRHPFNLSVYKNITSVLGPNILKWLCPTAVSHLKDGMSYPTAHDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04270			DHHC-type zinc finger family p...		Potri.010G226100 [exp]	0	1
AT1G72510			Protein of unknown function (D...		Potri.003G067800 [exp]	1.73	0.6805
AT5G05930		ATGC1	ARABIDOPSIS GUANYLYL CYCLASE 1...		Potri.008G062100 [exp]	3.16	0.6510
AT2G40810		ATATG18C	homolog of yeast autophagy 18C...		Potri.019G062800 [exp]	3.46	0.6706
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Potri.001G250400 [exp]	5.47	0.6664	Pt-ATPH1.2
AT4G35860		ATGB2, AtRABB1b...	GTP-binding 2 (.1.2)		Potri.009G159600 [exp]	9.79	0.6542	Pt-ATGB2.1
AT1G13870		DRL1, AtKTI12	DEFORMED ROOTS AND LEAVES 1, c...		Potri.008G094600 [exp]	12.96	0.6477	DRL1.1
AT1G53320	TUB	AtTLP7	tubby like protein 7 (.1)		Potri.001G390200 [exp]	14.86	0.6084
AT1G18470			Transmembrane Fragile-X-F-asso...		Potri.015G050300 [exp]	15.74	0.6386
AT1G16180			Serinc-domain containing serin...		Potri.003G186500 [exp]	16.12	0.6230
AT1G19360		RRA3	reduced residual arabinose 3, ...		Potri.014G042700 [exp]	17.54	0.6075

Compare expression of checked genes

Potri.010G226100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.