Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54850 806 / 0 ATPUB14 plant U-box 14 (.1) AT3G46510 651 / 0 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 548 / 0 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 441 / 3e-147 PUB15 Plant U-Box 15 (.1) AT1G71020 429 / 5e-143 ARM repeat superfamily protein (.1.2) AT1G23030 425 / 1e-141 PUB11 ARM repeat superfamily protein (.1) AT1G29340 274 / 2e-82 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G07360 259 / 1e-79 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT2G23140 256 / 7e-75 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G01830 236 / 2e-68 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G035700 [exp] 1108 / 0 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.009G029600 [exp] 691 / 0 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 683 / 0 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.002G009900 [exp] 480 / 2e-162 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.010G113900 [exp] 460 / 7e-155 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 447 / 5e-150 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.009G165900 [exp] 446 / 3e-149 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.004G205000 [exp] 425 / 5e-141 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.008G071600 [exp] 305 / 2e-94 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037970 [exp] 920 / 0 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10016565 [exp] 669 / 0 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 668 / 0 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10038699 [exp] 545 / 0 AT3G54850 599 / 0.0 plant U-box 14 (.1) Lus10012260 [exp] 460 / 3e-154 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10043471 [exp] 450 / 8e-151 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10016016 [exp] 448 / 9e-150 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10034113 [exp] 437 / 1e-135 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10007511 [exp] 366 / 6e-118 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10033249 [exp] 349 / 1e-116 AT3G54850 340 / 3e-113 plant U-box 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.010G226500.1 pacid=42797413 polypeptide=Potri.010G226500.1.p locus=Potri.010G226500 ID=Potri.010G226500.1.v4.1 annot-version=v4.1 ATGGTATTAACGGAGGATCCGAATTCTGAGTTGATGAGTGGACTCGTTGACTCAGTGAAAGAGATTTCTATGTCACCGGAATGTAGAAATGTTTGCAAGA AGATGCATGGCAATTTGGTACGTAGAATCAAGCTGTTGAGCCCTTTGTTTGAGGAATTGAAGGACAACAATGAAGAGCTAAGTGAAGAAGAGACTAAGGG TTTTGAATTATTGAGAACCGCTTTAGATTCTGCTAAGGAGCTTCTCAAATTGGTTGTTGAAGGAAGCAAGGTGTATCAGACCTTGCAAAGAGACCACATA GCAGATAAGTTCAACCAGATCACAGAAAAAATTGAAGCAGCATTGAGTGAGATTCCTTATGACAAACTCAATTTATCGGAGGAGGTTCAAGAACAGATTG AACTTGTGCACGCTCAATTCAGAAGAGCAAAGGGAAGTCCAGAACTCCCAGATCATCAACTGGAAGTTGATTTAGCCATAGCACAGAGAGAGAAGGAGCC TGACCCTGCAATACTAAAAAGACTTTCAGAAAGGCTGCATCTCCAGACTATTGATGATCTAAAGAAAGAATCCCTTGCGTTCCATGAACTGGTTATTGCA AGTGGTGGAGATCCAGGAGATTGGTTCAAGAAGATGGCATCCCTCTTTAAGAAGTTAAAAGACCACGTTCAGATGGCAAACCCTGAAGCTAATTGTTCTG AGGCTGAAAAGGTCATGATGAAACACAGATCTCCAGTTATTCCAGATGATTTCCGGTGCCCAATATCTCTTGAACTAATGAAAGATCCTGTTATTATCTC TACCGGACAGACTTATGAAAGATCTTGCATCCAAAAATGGCTAGATGCAGGTCACAAGACCTGTCCAAAAACACAGCAGACGCTCTTGCATACTGCACTT ACACCTAACTATGTTTTGAAGAGTTTGATTGCTTTGTGGTGTGAGAGCAATGGTGTAGAGCTTCCTAAACAGCCAGGGGCTTGTAGAAGCAAAAATGTAA GAAGTAGCATTTCATATTGCGACCGAGCTGCGATAGCTACCTTATTAGACAAATTGGCAAATGGTAATCTGGAACAACAAAGATCAGCTGCTGGAGAGCT TCGTTTATTAGCTAAGAGGAATGTAGATAACAGAGTCTGTATTGCTGAAGCAGGAGCAATTCCACTCCTCGTGGAGCTATTATCCTCAACAGATCCTCGG ACCCAAGAGCATGCTGTTACAGCGCTTCTCAACCTTTCCATAAATGATATTAACAAGGGAACCATTGTTAATGCAGGGGCCATTCCTGATATAGTAGATG TTTTGAAAAATGGAAGCATGGAGGCAAGAGAAAATGCTGCTGCAACCCTTTTCAGTTTATCTGTTGTAGATGAGAATAAGGTGGCAATAGGAGCAGCTGG GGCTATCCCAGCTCTTATAAAGTTGCTTTGTGATGGGACTCCAAGAGGAAAGAAGGATGCTGCCACTGCTATCTTTAATCTTTCAATCTATCAAGGGAAC AAGGCAAGGGCTGTGAAGGCTGGTATTGTCCCACCCCTGATGAGGTTGCTGAAGGATGCCGGGGGAGGAATGGTGGATGAAGCATTGGCAATTCTTGCCA TTCTTGCAAGTCATCAAGAAGGGAAGGTGGCAATTGGTCAGGCTGACCCAATTCCTGTTCTGATGGAGGTCATCAGCACTGGATATCCACGCAACCGAGA GAATGCTGCAGCCATCTTGTGTTCACTTTGCACTGTCGATTCACAGCAGTTGAAGTTGGCTAGGCAGTTCGGTGCTGAAAAGGCACTGAAAGAACTATCG GAAAGCGGTACTGACAGGGCAAAGAGAAAAGCTGGAAGCATATTAGAGCTCCTTCAGGGAGTCGATGCGATTGTTACTCAAAGCTGA
AA sequence Show only first row Show all	>Potri.010G226500.1 pacid=42797413 polypeptide=Potri.010G226500.1.p locus=Potri.010G226500 ID=Potri.010G226500.1.v4.1 annot-version=v4.1 MVLTEDPNSELMSGLVDSVKEISMSPECRNVCKKMHGNLVRRIKLLSPLFEELKDNNEELSEEETKGFELLRTALDSAKELLKLVVEGSKVYQTLQRDHI ADKFNQITEKIEAALSEIPYDKLNLSEEVQEQIELVHAQFRRAKGSPELPDHQLEVDLAIAQREKEPDPAILKRLSERLHLQTIDDLKKESLAFHELVIA SGGDPGDWFKKMASLFKKLKDHVQMANPEANCSEAEKVMMKHRSPVIPDDFRCPISLELMKDPVIISTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL TPNYVLKSLIALWCESNGVELPKQPGACRSKNVRSSISYCDRAAIATLLDKLANGNLEQQRSAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSTDPR TQEHAVTALLNLSINDINKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVVDENKVAIGAAGAIPALIKLLCDGTPRGKKDAATAIFNLSIYQGN KARAVKAGIVPPLMRLLKDAGGGMVDEALAILAILASHQEGKVAIGQADPIPVLMEVISTGYPRNRENAAAILCSLCTVDSQQLKLARQFGAEKALKELS ESGTDRAKRKAGSILELLQGVDAIVTQS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54850		ATPUB14	plant U-box 14 (.1)		Potri.010G226500 [exp]	0	1
AT3G12560		ATTBP2, TRFL9	TELOMERIC DNA-BINDING PROTEIN ...		Potri.010G202400 [exp]	8.12	0.6084
AT5G56460			Protein kinase superfamily pro...		Potri.003G222600 [exp]	22.44	0.5990
AT1G26580			unknown protein		Potri.008G094400 [exp]	24.65	0.5733
AT3G06240			F-box family protein (.1)		Potri.001G318300 [exp]	55.47	0.5813
AT3G12620			Protein phosphatase 2C family ...		Potri.008G046900 [exp]	63.63	0.5158
AT1G07630		PLL5	pol-like 5 (.1)		Potri.009G030600 [exp]	73.27	0.5685
AT5G07610			F-box family protein (.1)		Potri.013G110300 [exp]	73.68	0.5980
AT4G22120			ERD (early-responsive to dehyd...		Potri.004G005900 [exp]	75.57	0.5925
					Potri.013G042750 [exp]	93.91	0.5964
AT2G45910			U-box domain-containing protei...		Potri.002G160200 [exp]	118.74	0.5833

Compare expression of checked genes

Potri.010G226500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.