Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54860 929 / 0 ATVPS33 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) AT1G77140 57 / 2e-08 ATVPS45, VPS45 vacuolar protein sorting 45 (.1) AT4G12120 50 / 4e-06 ATSEC1B, SEC1B Sec1/munc18-like (SM) proteins superfamily (.1) AT1G12360 48 / 2e-05 KEU keule, Sec1/munc18-like (SM) proteins superfamily (.1) AT1G02010 46 / 9e-05 SEC1A secretory 1A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G035600 [exp] 1054 / 0 AT3G54860 968 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Potri.002G071600 [exp] 59 / 5e-09 AT1G77140 996 / 0.0 vacuolar protein sorting 45 (.1) Potri.005G188000 [exp] 57 / 3e-08 AT1G77140 999 / 0.0 vacuolar protein sorting 45 (.1) Potri.014G069300 [exp] 46 / 7e-05 AT1G02010 945 / 0.0 secretory 1A (.1.2) Potri.004G204400 [exp] 44 / 0.0003 AT2G17980 1013 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037969 [exp] 685 / 0 AT3G54860 650 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Lus10038698 [exp] 671 / 0 AT3G54860 654 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Lus10007300 [exp] 198 / 2e-58 AT3G54860 179 / 1e-51 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Lus10002776 [exp] 114 / 6e-29 AT3G54860 102 / 3e-25 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Lus10018921 [exp] 50 / 3e-06 AT1G77140 974 / 0.0 vacuolar protein sorting 45 (.1) Lus10028622 [exp] 50 / 5e-06 AT1G77140 977 / 0.0 vacuolar protein sorting 45 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [poplar] [flax] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Potri.010G226600.1 pacid=42796970 polypeptide=Potri.010G226600.1.p locus=Potri.010G226600 ID=Potri.010G226600.1.v4.1 annot-version=v4.1 ATGTCTCAAATTCCTAACCTAGACAACTCTCCTCTCAATTTAAAATTCCTCAGGGAACAATCTCAGAGAGAGCTCGTTAACATCCTCAATAACATTCGAG GAAAGAAGTGTTTGGTGATTGATCCAAAGCTTAGCGGATCACTGTCGTTGATCATCAAATCAACAATTCTTAAGGAAAATGGGGCTGATTTGCGGCATCT TTCAGCGGAACCAGTTGACATTGATTGTACTAAAGTGGTTTACCTTGTTCGTTCAGAGTTTAGTTTGATGAGATTCATATGTTCACATATTCATAATGAT ACGTCTAAAGGACTTCAGAGGGAGTACTACGTTTATTTTGTACCTAGGCGTGAGGTTGTTTGTGAGAAGGTACTCGAGGAGGAGAAGGTTCATAACCTGA TGACCATTGGGGAGTACCCATTATACATGGTTCCATTGGACGAGGATGTACTATCATTTGAACTTGACTTAGCTAACAAAGAATGCCTAGTTGACGGCAA TACAAGTTCACTTTGGCATATTGCAAAGGCCATTCACAAGCTCGAGTCTTCTTTTGGAGTGATACCATATGTAAGGGCAAAAGGTAAAGCATCAGTACGT GTTGCTGACATTCTCAATCGCATGCAAGCAGAAGAACCAGTTAACACATCCGATATGGTTATGCCAGGGATAAATACTCTCATCCTTATAGACAGGGAGG TGGACATGGTTACTCCTATGTGCTCGCAGTTAACATATGAAGGACTTCTGGATGAGTTTTTGCATATCAACAATGGTGCCGTGGAGCTTGATCCATCTAT CATGGGTGCTCAACAAGAAGGAAAAAAGATCAAGGTTCCACTTAATTCAAGTGACAAGCTGTTCAAGGAAATTCGAGATCTCAACTTTGAAGTTGTTGCC CAGGTCCTACGTCAAAAGGCAACATCTATGAAGCAGGACTACACAGAAATGACAACTACTAATCAGACAGTTTCTGAGTTAAAGGATTTTGTTAAAAAGC TGAATTCATTGCCAGAGATGACTAGGCACATAAATCTCGCTCAGCATCTATCAACATTCACATCAAAGCAGTCATTTCTTTCACGACTTGACATGGAGCA AACACTCATCGAGGCTCAGAGTTATGACATATGCTTTGATTACATTGAAGAATCGATCCATAAGCAGGAGCCTCTTGTTAGTGTCTTGCGTCTTCTGATC TTATTTTCTATCACAAATTCAGGGCTTCCAAAAAGGAATTTTGACCATTTGAGGAGGGAGCTGCTCCATAGCTATGGATTTGAGCACATAGCAATGTTGA ATAATTTAGAAAAGGCTGGATTGCTTAAAAAGCAGGAAAATAAAAGTAACTGGCTGACTATCAAACGTACTCTCCAACTTGTAGTTGAGGATACTGACAC TGCCAACCCCAATGACATTGCCTATGTCTTTTCTGGATATGCACCACTTAGCATTCGCCTTGTTCAGCAAGCTGTTAGATCCGGATGGCGTCCCATGGAA GAAATTTTGAAGCTGTTGCCAGGACCTCATTCAGAAACAAAGAGAGGTGGATTCACAAGCAGTCCCTCGTTCGACACACTGCATGGGGCTTCAGCAGCTG TAGACAGAGTTGCTGATGGAAGACGCTCCTTGGTACTTGTTGTGTTCATTGGAGGGGTAACATTTGCAGAAATTTCTGCACTCCGATTTCTTAGTGCTCA GGAAACGATGGCATATGATTTGATTATTGGGACAACAAAAATCGTCAGTGGCAATACCTTGATTGAGACATACATGGAAAAGTTGGGTTAA
AA sequence Show only first row Show all	>Potri.010G226600.1 pacid=42796970 polypeptide=Potri.010G226600.1.p locus=Potri.010G226600 ID=Potri.010G226600.1.v4.1 annot-version=v4.1 MSQIPNLDNSPLNLKFLREQSQRELVNILNNIRGKKCLVIDPKLSGSLSLIIKSTILKENGADLRHLSAEPVDIDCTKVVYLVRSEFSLMRFICSHIHND TSKGLQREYYVYFVPRREVVCEKVLEEEKVHNLMTIGEYPLYMVPLDEDVLSFELDLANKECLVDGNTSSLWHIAKAIHKLESSFGVIPYVRAKGKASVR VADILNRMQAEEPVNTSDMVMPGINTLILIDREVDMVTPMCSQLTYEGLLDEFLHINNGAVELDPSIMGAQQEGKKIKVPLNSSDKLFKEIRDLNFEVVA QVLRQKATSMKQDYTEMTTTNQTVSELKDFVKKLNSLPEMTRHINLAQHLSTFTSKQSFLSRLDMEQTLIEAQSYDICFDYIEESIHKQEPLVSVLRLLI LFSITNSGLPKRNFDHLRRELLHSYGFEHIAMLNNLEKAGLLKKQENKSNWLTIKRTLQLVVEDTDTANPNDIAYVFSGYAPLSIRLVQQAVRSGWRPME EILKLLPGPHSETKRGGFTSSPSFDTLHGASAAVDRVADGRRSLVLVVFIGGVTFAEISALRFLSAQETMAYDLIIGTTKIVSGNTLIETYMEKLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.010G226600 [exp]	0	1
AT5G58510			unknown protein		Potri.009G076000 [exp]	4.24	0.7870
AT5G26667		PYR6	P-loop containing nucleoside t...		Potri.014G104700 [exp]	4.58	0.7591
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.010G227100 [exp]	14.42	0.7618
AT5G08110			nucleic acid binding;ATP-depen...		Potri.012G063201 [exp]	15.00	0.7495
AT1G20760			Calcium-binding EF hand family...		Potri.002G008600 [exp]	15.16	0.7383
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Potri.005G157400 [exp]	28.56	0.7305
AT4G34215			Domain of unknown function (DU...		Potri.001G300800 [exp]	29.49	0.6900
AT2G46560			transducin family protein / WD...		Potri.002G173300 [exp]	32.44	0.7391
AT5G27970			ARM repeat superfamily protein...		Potri.013G035100 [exp]	34.29	0.7039
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.010G130400 [exp]	34.32	0.7284	CLE12.1

Compare expression of checked genes

Potri.010G226600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.