Plant FIBer expression Database

Potri.010G226801 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G035500
[exp]
0 / 1 AT2G39140 480 / 2e-169 SUPPRESSOR OF VARIEGATION 1, PIGMENT DEFECTIVE 328, pseudouridine synthase family protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G226801.1 pacid=42797513 polypeptide=Potri.010G226801.1.p locus=Potri.010G226801 ID=Potri.010G226801.1.v4.1 annot-version=v4.1
ATGGTAGCAGCACTCTCCTCTCATCACCACACCTTCTTCAGAAAACCCTCACTCTATCACCTCAACAAACCCCTCCGTTCCAAACGCATCACTTCCTCCT
TAGAATTCAACATCACTTTCGCCCCTCCTAAACCGGAATTCCAAATTCACCGCCAACCTCCGAAACGACCCCGCTTCCCTCTCTCTCCCTCCATGCCAGC
TCTTCATTCCCCGGATAATCCGAGGAGAAGATGGAAACCTCAAGCTCCATTCTCACCATCCGGAGCGTTCCCTCCACGCTCTCACCGATGCGAAAACACA
ACCAAAGAAAAAGATAGAGGAGGTGAGGAAGGGGAGTGGTGGAAATGCGAAGACCAAGCTGGAAGTGGAGCCTTGGCGTTCTAA
AA sequence
>Potri.010G226801.1 pacid=42797513 polypeptide=Potri.010G226801.1.p locus=Potri.010G226801 ID=Potri.010G226801.1.v4.1 annot-version=v4.1
MVAALSSHHHTFFRKPSLYHLNKPLRSKRITSSLEFNITFAPPKPEFQIHRQPPKRPRFPLSPSMPALHSPDNPRRRWKPQAPFSPSGAFPPRSHRCENT
TKEKDRGGEEGEWWKCEDQAGSGALAF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G39140 PDE328, SVR1 SUPPRESSOR OF VARIEGATION 1, P... Potri.010G226801
[exp]
0 1
AT5G16715 EMB2247 embryo defective 2247, ATP bin... Potri.004G090732
[exp]
3.74 0.9029
AT2G06990 HEN2 hua enhancer 2, RNA helicase, ... Potri.018G146001
[exp]
5.47 0.8843
AT2G44970 alpha/beta-Hydrolases superfam... Potri.014G055900
[exp]
7.81 0.8012
AT5G05680 EMB2789, MOS7 MODIFIER OF SNC1,7, EMBRYO DEF... Potri.008G067600
[exp]
9.89 0.7856
AT2G18220 Noc2p family (.1) Potri.003G213601
[exp]
11.61 0.8701
AT3G13860 HSP60-3A heat shock protein 60-3A (.1) Potri.003G039475
[exp]
12.12 0.8617
AT1G07705 NOT2 / NOT3 / NOT5 family (.1.... Potri.017G065900
[exp]
12.96 0.8290
AT1G35670 CPK11, ATCDPK2,... calcium-dependent protein kina... Potri.019G050950
[exp]
14.45 0.8554
AT1G77230 Tetratricopeptide repeat (TPR)... Potri.005G184001
[exp]
14.83 0.8341
AT5G10070 RNase L inhibitor protein-rela... Potri.007G087000
[exp]
14.86 0.8386

Potri.010G226801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.