Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39140 62 / 3e-13 PDE328, SVR1 SUPPRESSOR OF VARIEGATION 1, PIGMENT DEFECTIVE 328, pseudouridine synthase family protein (.1) AT3G43340 48 / 3e-09 Pseudouridine synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G035500 [exp] 75 / 8e-18 AT2G39140 480 / 2e-169 SUPPRESSOR OF VARIEGATION 1, PIGMENT DEFECTIVE 328, pseudouridine synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038697 [exp] 75 / 1e-17 AT5G55840 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037966 [exp] 70 / 8e-16 AT2G39140 469 / 3e-165 SUPPRESSOR OF VARIEGATION 1, PIGMENT DEFECTIVE 328, pseudouridine synthase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G226901.1 pacid=42800094 polypeptide=Potri.010G226901.1.p locus=Potri.010G226901 ID=Potri.010G226901.1.v4.1 annot-version=v4.1 ATGCGTGATTGCAGATATATTGCAACAATTGATGGTGCAGTAAGTAAGCGGTCTGCCATCAGTGAAGGAACAGTCATTGACAGTGTCCATTGCACCCCAG ACTCCGTGGAGTTGTTACCACAACAACCAGATATATCAAGACCACGTCTTTGTATTATGGTGTGTATTTTATTTCTGTTCAGCCAGCTAGAATTATTTTC ATAA
AA sequence Show only first row Show all	>Potri.010G226901.1 pacid=42800094 polypeptide=Potri.010G226901.1.p locus=Potri.010G226901 ID=Potri.010G226901.1.v4.1 annot-version=v4.1 MRDCRYIATIDGAVSKRSAISEGTVIDSVHCTPDSVELLPQQPDISRPRLCIMVCILFLFSQLELFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.010G226901 [exp]	0	1
AT5G39590			TLD-domain containing nucleola...		Potri.002G024966 [exp]	1.00	0.8744
AT5G49960			unknown protein		Potri.003G008800 [exp]	5.65	0.8033
AT1G34270			Exostosin family protein (.1)		Potri.013G116200 [exp]	6.32	0.7736
AT5G10830			S-adenosyl-L-methionine-depend...		Potri.005G067500 [exp]	7.74	0.8034
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G036300 [exp]	8.94	0.7852
AT2G25760			Protein kinase family protein ...		Potri.006G236600 [exp]	9.16	0.7937
AT3G07510			unknown protein		Potri.014G176400 [exp]	9.79	0.7709
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Potri.018G132500 [exp]	13.74	0.7552
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Potri.013G088400 [exp]	15.00	0.7984
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G035800 [exp]	16.91	0.7670

Compare expression of checked genes

Potri.010G226901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.