Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54870 939 / 0 AtKINUc, CAE1, ARK1, MRH2 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) AT1G12430 543 / 3e-177 AtKINUa, ARK3, PAK phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) AT1G01950 541 / 9e-177 AtKINUb, ARK2 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) AT3G63480 209 / 2e-58 ATP binding microtubule motor family protein (.1.2) AT1G59540 202 / 1e-53 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 202 / 7e-53 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G10180 196 / 1e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 193 / 3e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G19050 193 / 1e-49 POK2 phragmoplast orienting kinesin 2 (.1) AT2G37420 192 / 1e-49 ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117000 [exp] 546 / 2e-178 AT1G12430 1348 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.014G070900 [exp] 544 / 1e-177 AT1G01950 1359 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.001G115100 [exp] 538 / 2e-175 AT1G12430 1325 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.002G149400 [exp] 533 / 2e-173 AT1G01950 1360 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.008G035400 [exp] 434 / 1e-144 AT3G54870 345 / 8e-113 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.005G038900 [exp] 205 / 6e-57 AT3G63480 533 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.014G013300 [exp] 207 / 3e-55 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G082400 [exp] 206 / 4e-54 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 197 / 2e-51 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038696 [exp] 1334 / 0 AT1G01950 966 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10037965 [exp] 1283 / 0 AT1G01950 920 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10007014 [exp] 543 / 1e-176 AT1G12430 1304 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10038007 [exp] 536 / 3e-174 AT1G01950 1272 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10009241 [exp] 534 / 1e-173 AT1G01950 1353 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10006670 [exp] 508 / 7e-165 AT1G12430 1143 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10036146 [exp] 207 / 2e-54 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018120 [exp] 205 / 9e-54 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025304 [exp] 201 / 1e-52 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10018661 [exp] 200 / 1e-52 AT1G59540 924 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Potri.010G227000.3 pacid=42799729 polypeptide=Potri.010G227000.3.p locus=Potri.010G227000 ID=Potri.010G227000.3.v4.1 annot-version=v4.1 ATGGCTTCTAATTCAACAGTGAGAGTCTCAAGCAGAGGAGCAGAGAGGCAACTGCTACAAACTCAAACTAATCCTCTCCATGGATCTTCTTCTTCGAGTT CCAGAAATGGAAATTCACAACAAAATAATAATAGTAATAGTAATAGCAGCCATTCTGCTGTTCGCTCTAAGGCTCCTCCTCCTCCTGCTGCTTCGAGACG CTCTGTTACTCCTTCCCGCTCTCACTCTTTCGACTTCGATAACGATCATGGAAGAGTGAGAGTAGCTGTTAGGTCACGGCCAAGGAATGCAGAAGAACTC ATTTTAGACGCTGATTTTAACGATTGCGTTGAATTATTTCCCGAGCTGAAGAGGTTGAAATTGAAGAAAAACAATTGGAGTTCTGAATCCTATAGATTCG ACGAGGTTTTAACAGAAACTGCTTCTCAAAAAAGAGTTTACGAAGTCGTTGCAAAGCCTGTTGTACAGAGTGTATTGAGTGGGTATAATGGGACGGTTAT GGCTTACGGTCAAACAGGTACTGGAAAAACTTATACGGTTGGAAAACTAGGTAAAGATGATGCGTCGGAGCGTGGTATTATGGTTAGAGCTCTCGAGGAC ATACTTGCTAGTACAACACGTGGTTCTGATATTGTGGAGGTTTCCTATTTGCAGTTGTATATGGAGTCTATACAAGACTTGCTTGCACCAGAAAAGATTA ATATCCCTATTAATGAGGACGCAAGGACTGGGGAAATATCATTGCCTGGTGCTTCAGTAGTCAAGGTTGAAGATCTTGATCATTTTTCAGAACTACTACA AATTGGTGAGGCAAACCGTCATGCAGCTAATACAAAGCAGAATACCGAATCTTCCCGAAGTCACGCAATTCTAATGGTTTATGTACGAAGATCCATAAAT CAAAAGGCAGAAGATGAAACCACTTCACAAGAGAAGGATGTGAAAAGTAATTTATCTGGTGGCAATGGGATACCTAGAGTAAGGAAAAGCAAGTTGCTGA TTGTGGATCTTGCTGGATCTGAAAGATTAGACAAATCTGGTAGTGAAGGTCACTTGCTTGAAGAGGCTAAGTTTATCAATCTATCTCTTACTTCCCTTGG CAAATGCATAAATGCATTGGCTGAAAACAGTCCACATATACCAACAAGGGATTCTAAGCTAACCAGATTGTTGCGTGATTCATTTGGAGGCTCTGCAAGG ACTTCACTGATAATAACAATTGGGCCATCTGGACAACATCATGCAGAGACTACTAGCACAATCATGTTTGGGCAACGGGCAATGAAAATAGTGAACATGG TGAAGCTTAAAGAAGAATTTGACTATGAAAGTTTATGTCGGAAGCTCGAGACTCAAGTAGATCATCTTACAGCAGAACTAGAAAGGGAAAAAAAATTGAG AGAGTGTGAAAAACTTGACTTGGAGAAACAGCTTAAACAATGTCAAGTCTCTTTTTCTGAATCAGAAAAGAATCTAGTCACAAGGTCCGAGTTCCTACAG AAGGAAAATACTCGTCTAGAGGTGGAGATGCAAGACATCTTAAGTGAATTGGAGTCTCAAAAAGGTTGTAATGATTTAATGCGTGACAAGGTTTCTCAGC TAGAGATTAGCTTAAACAATAGTCAGCAGCAGCAGCAGCTTGAAAATTCTACATATCAGAAAATGCTTGCTGACACTACCCAGATGTATGAAAAGAAAAT ATCAGAGTTAATTAAGCAGTTAGAAAACGAGTGTGCTCGTTGTGAAAGAGCTGAAGAACGATTAAATTTGACGAAGAATCTTCTGGGTGATTACCAAAAA TCAATTAAGCAACATGAATCGGAAGATTCTAAATATCAGAAGGTACTTGCAGACACCACTCAGATGTATGAGAAGAAAATAGCAGAATTAAATAAGCTAC TAGGTGATGAGCGTAGTCATTTTGCAAGTGCTGAGGAACAGTTAGATTTGATGAAGAAGCTCCTCAGTGATTCTCAAAAATCAATTGAGCAACATGAGGT GGAAAATTCTGTATATCAGAAAGCACTTGCAGACACCACCCAACTGTATGAGAAGAAAATAGCAGAGCTGATTAAGCAAGTAGAGGATGAGCATACCCGT TTGGAAGGAGCAGAAGAACAACTGGATCTGGCAAACAAGCTTCTAAGTGATCAACAACACTTGATGCAGGACTTGAAAGAGACTGCTGAACTAAGGATGA AGTTGCAAAGAATATGTCAGGCACATGAAAGCGCTCAAACTGAACTTCAATCCTTGAAGTTGGAACACAAAAATCTTTCACGAGAGAAGGCAATACTAAG TGAAGAACTTCATGACATGAAGCAAGCACTTGCAGCTGAAGAGAAACAGAGGAAAAGTATTGAACATGAGCTGGATAAACTAAAGAAAAGTGCACCTGAA AGTGATAAAGATTTTGAGGATAAGAAACCATTCGGGAAGGAAAATATTGGTAACGGATCTTCAACCTTTGGGAACCTGAAGGGTTTACACAAGTCGAACT CTTCAAAGGCTGCACTGTCTAGTCAAAGGGCAACCATTGCAAAGATTTGTGAAGAAGTTGGGCTTAAAAAGATACTGCAATTATTAACATCTGAAGACTC TGATGTCCAAATCCATGCAGTGAAAGTGATTGCCAATCTGGCTGCCGAAGATATTAATCAAGAAAAGATTGTGGAGGAAGGGGGCTTAGATGCACTGCTA ATGCTGTTAAAATCATCTCAAAACACAACTGTGCTCAGAGTGGCTTCTGGGGCCATTGCCAATTTGGCAATGAATGAACTGAATCAAGGGTTAATAATGA GCAAAGGTGGTGGACAGTTACTGGCTAAAACAGCATTTAAAACAGATGATCCACAAACTCTTAGAATGGTAGCTGGTGCACTAGCAAACTTATGTGGAAA TGAGAGTTTACACATGATACTGAAAGAAGATGGAGGCATCAACGCACTTTTAGGAATGGCTAGATCCGGGAATAACGATGTCATTGCACAAGTTGCAAGG GGGATGGCTAATTTTGCAAAATGTGAATCCCGCGGAATTATTCAAGGACATAGAAAAGGCCGTTCACTATTAATAGAAGACGGTGTCCTTGAATGGTTGG TTTCCTATTCTAACACGGCTTCAGCTTCAACACGGCGCCATGTTGAGCTCGCTCTGTGTCATTTGGCACAGAATGACAACAATGACAGGGAATTCATTTC TTGTGGAGGGGTAAGAGAACTAGTCCGAATATCAGTTGAATCCAACAGAGAAGATATCCGCAACCTGGCAAAGAAGACACTAAAAATGAACCCGACTTTT CAAGCTGAGGTGAATCCAGAATGGCTGTGA
AA sequence Show only first row Show all	>Potri.010G227000.3 pacid=42799729 polypeptide=Potri.010G227000.3.p locus=Potri.010G227000 ID=Potri.010G227000.3.v4.1 annot-version=v4.1 MASNSTVRVSSRGAERQLLQTQTNPLHGSSSSSSRNGNSQQNNNSNSNSSHSAVRSKAPPPPAASRRSVTPSRSHSFDFDNDHGRVRVAVRSRPRNAEEL ILDADFNDCVELFPELKRLKLKKNNWSSESYRFDEVLTETASQKRVYEVVAKPVVQSVLSGYNGTVMAYGQTGTGKTYTVGKLGKDDASERGIMVRALED ILASTTRGSDIVEVSYLQLYMESIQDLLAPEKINIPINEDARTGEISLPGASVVKVEDLDHFSELLQIGEANRHAANTKQNTESSRSHAILMVYVRRSIN QKAEDETTSQEKDVKSNLSGGNGIPRVRKSKLLIVDLAGSERLDKSGSEGHLLEEAKFINLSLTSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSAR TSLIITIGPSGQHHAETTSTIMFGQRAMKIVNMVKLKEEFDYESLCRKLETQVDHLTAELEREKKLRECEKLDLEKQLKQCQVSFSESEKNLVTRSEFLQ KENTRLEVEMQDILSELESQKGCNDLMRDKVSQLEISLNNSQQQQQLENSTYQKMLADTTQMYEKKISELIKQLENECARCERAEERLNLTKNLLGDYQK SIKQHESEDSKYQKVLADTTQMYEKKIAELNKLLGDERSHFASAEEQLDLMKKLLSDSQKSIEQHEVENSVYQKALADTTQLYEKKIAELIKQVEDEHTR LEGAEEQLDLANKLLSDQQHLMQDLKETAELRMKLQRICQAHESAQTELQSLKLEHKNLSREKAILSEELHDMKQALAAEEKQRKSIEHELDKLKKSAPE SDKDFEDKKPFGKENIGNGSSTFGNLKGLHKSNSSKAALSSQRATIAKICEEVGLKKILQLLTSEDSDVQIHAVKVIANLAAEDINQEKIVEEGGLDALL MLLKSSQNTTVLRVASGAIANLAMNELNQGLIMSKGGGQLLAKTAFKTDDPQTLRMVAGALANLCGNESLHMILKEDGGINALLGMARSGNNDVIAQVAR GMANFAKCESRGIIQGHRKGRSLLIEDGVLEWLVSYSNTASASTRRHVELALCHLAQNDNNDREFISCGGVRELVRISVESNREDIRNLAKKTLKMNPTF QAEVNPEWL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54870		AtKINUc, CAE1, ...	MORPHOGENESIS OF ROOT HAIR 2, ...		Potri.010G227000 [exp]	0	1
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.009G012100 [exp]	4.47	0.9282	PtrFLA14-9,FLA14.9
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.012G014966 [exp]	7.07	0.9258
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.019G121200 [exp]	10.24	0.9203	FLA14.11
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.004G117200 [exp]	11.13	0.9206
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G123200 [exp]	13.85	0.9189	FLA14.13
AT3G55060			unknown protein		Potri.008G047200 [exp]	15.16	0.9035
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G151500 [exp]	16.73	0.9053	Pt-FLA14.15
AT3G27330			zinc finger (C3HC4-type RING f...		Potri.001G336766 [exp]	18.57	0.8970
AT4G34215			Domain of unknown function (DU...		Potri.014G022700 [exp]	18.70	0.8990
AT1G27752			Ubiquitin system component Cue...		Potri.014G016900 [exp]	20.85	0.7884

Compare expression of checked genes

Potri.010G227000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.