Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10380 1484 / 0 SEC8, ATSEC8 subunit of exocyst complex 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G035300 [exp] 1905 / 0 AT3G10380 1475 / 0.0 subunit of exocyst complex 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038694 [exp] 1529 / 0 AT3G10380 1336 / 0.0 subunit of exocyst complex 8 (.1) Lus10037962 [exp] 1291 / 0 AT3G10380 1147 / 0.0 subunit of exocyst complex 8 (.1) Lus10037963 [exp] 193 / 5e-57 AT3G10380 174 / 3e-51 subunit of exocyst complex 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF10475 [poplar] [flax] Vps54_N Vacuolar-sorting protein 54, of GARP complex
Representative CDS sequence Show only first row Show all	>Potri.010G227100.4 pacid=42799490 polypeptide=Potri.010G227100.4.p locus=Potri.010G227100 ID=Potri.010G227100.4.v4.1 annot-version=v4.1 ATGGGAATTTTTGATGGGTTGCCCGTTCCTCCTGACAAAGCACAGTATTTAAGAGAAGAGCTTTCAAGAATAGATGAGAGTTGGGCTGCTGCACGTTTTG ACTCATTGCCTCATGTTGTCCATATCTTAACCTCTAAAGATCGTGAAGCTGAAGCCCAAGTTTTGAAGGAGCAAAGCGATGTTGTTGAGGATGTCGTAGA TGAAGTTGTACAATCTTATCACAGTGGCTTCAACAAAGCAATTCAAAACTATTCTCAGATCTTGCGGTTATTCAGTGAATCTGCTGAGAGTATTGCTTCA CTAAAGGTTGATTTAGCTGAAGCAAAGAAACGTCTTGGTACCCGGAATAAGCAATTGCATCAGTTGTGGTATCGATCTGTTACACTACGACACATAATCT CTCTTTTAGATCAAATTGAAGGCATAGCTAAGGTTCCAGCTCGTATTGAGAAACTCATAGCAGAAAAGCAGTTTTATGCAGCAGTTCAATTGCACGCTCA CTCATCATTGATGCTTGAGCGAGAAGGTCTTCAAATGGTTGGTGCTCTTCAAGATGTGCGATCTGAGCTGACAAAGCTGCGAGGAGTTGTCTTCTATAAA ATTTTGGAGGATTTGCATGCACATCTTTACAACAAGGGAGAATACAGCTCAGTTGCCTCAAGCATGTATGAAAGAGATGATGAATTGCCGACTACCATAG CTGTTTTTACTATGAGCAATTCACAATCTCTATCTCGAAGAACAAGGTTGATGAAAGGTGACAATCATAGCTTTGCTGATGGATCATACAAGCCAAGCTC TATCGATGGAGGTTCTTCATTTGATGGTCATGATGAGGATCTTGATATAACTGATGAGGCAACCTCAGATGGGCACACTGCATCAGTGAGAACAAATGGA GGTGATGGGAACATGAAGGACATTAAAGTTGGTTCTCGTCAAATACCAAGTTGGCTTTCAAATTCTACTCCCGATGAATTTATTGAAACCATTAAAAAGA GTGATGCTCCACTTCATGTGAAGTATTTGCAGACCATGGTTGAGTGTCTCTGCATGCTGGGCAAAGTTGCAGCTGCTGGTGCAATAATATGCCAAAGGTT GCGACCTACAATTCATGACATCATCACTTCCAAGATAAAATCTCATTCAGAACTTGTCAACTCTTCAAGGTCTAGCATCAATCAATCTGCCCAAACCAGA GGTCTTCATTTTGTGAAAGGACAACTAGAAAGCTACAAGTTGCCAAAACAGAAACGTCAGAATGGAACACTATTGGCTGTAAGCCCAGTCTCGCCAGTGA TGGCTCCCACAGGGAAAGCACAGGCTGCTGCAAAAGAGCTTCTTGATTCAATTTTGGACACTGTTATTCGAATATTTGAGAATCATGTTGTTGTTGGAGA GCTTTTGGAGTTTAAAACTTCTCAGAATGTTGACTTGAACGCGCCAGGGTCGTTGACAACAGATTTAAATTGGAACCTGGATTCTGAAGCATCTCAAGTT ATTGGAGGTTACAGTATTGGTTTTTCCTTGACAGTTTTACAGAGTGAATGCCAACAACTCATATGTGAAATTCTGAGAGCCACTCCTGAAGCTGCATCTG CAGATGCTTCTGTACAAACTGCTAGACTGGCAAGCAAGGCTCCTTCAAAGGGAAAAAAGGATGGGTCAGAAGATGGGCTCTCCTTTGCTTTTCGCTTCAC GGATGCTACAATATCCATTCCTAACCAAGGTGTTGATCTCATTCGTCAAGGATGGAGCAGGAAGGGTCCAAATGTGCTCCAAGAAGGCTATGGGTCTGCT GCTGTCTTGCCTGAGCTAGGCATATATCTAGCAGCATCTGTATACCGTCCTGTTCTTCAGTTTACAGATAAGCTTGCTTCAATGCTGCCAAAAAATTATT CCCAGTTTGGGAATGATGGCTTGCTAGCTTTTGTGGAAAACTTCGTAAAAGATCATTTTTTACCAACAATGTTTGTGGATTACCGGAAGGGTGTACAGCA GGCTATATCAAGTCCAGCTGCATTTCGTCCGAGGGCCCATACTGTTGCTCCTTATACACCATCAATTGAGAAAGGTCGACCAGTCTTGCAGGGACTTTTG GCAATCGATTTCTTGGCAAAAGAGGTGCTTGGTTGGGCTCAAGCAATGCCCAAATTTGCTGGTGACCTTGTAAAGTTCGTTCAAACTTTCCTCGAGCGAA CATATGAAAGATGTCGGACATCATATATGGAGGCAGTTCTTGAGAAGCAGAGTTACATGCTGATTGGAAGGCATGATATTGAGAAACTGATGCGATTTGA CCCAGCAAGTGCATATTTACCGAATTCACTTGGTCAATCAAGCATGGTAAACAATGCCTCTGGTGCTGAATCTATAGAGATTGAATTGGAGTTGAGTGAA ATATTACTCAATCTGCGACCTATCAAGCAGGAAAATCTAATTCGTGATGATAACAAACTTATTTTGCTTGCTTCCCTTAGTGATTCACTCGAGTACGTTG CAGACTCAATTGAAAGGCTTGGGCAAATAACCTCACGATCATCAAATCAAGTAGCAGATAAAGCCAAGACTCTGGCAGCATTTGCTGATGATTATAGAAA ATTGGCAATTGACTGCCTAAAGGTTTTGCATGTAGAGATGAAGTTGGAAACAATATTCCATATGCAGGAAATGACAAACAGGGAGTACTTGGAGGACCAA GATGCAGAAGAGCCAGATGACTTTGTCATTGCTCTCACTGCACAGATAACACGTAGAGACGAGGAAATGGCACCTTTTGTTGCAGCAGTGAAGCAGAATT ACATATTTGGTGGAATTTGTAGTATTGCAGCAAATGCATCTATCAAGGCTTTGGCTGACATGAAGTCCATTAATCTTTTTGGAGTTCAACAAATTTGCCG GAATTCAATTGCATTGGAACAGGCCCTTGCAGCTATCCCATCGATGGATAGCGAAGCTGTGCAGCAGAGATTAGATCATGTCCGAACATATTATGAACTA TTAAACATGCCATTTGAGGCCTTACTAGCTTTCATCACCGAACATGAGAACTTGTTTACACCCGCAGAGTATGCCAATCTTCTGAAGGTGAACGTCCTAG GAAGGGAAATCCCACCAGATGCGCAGGATCGAGTCTCATACATTTTATCCCATTAA
AA sequence Show only first row Show all	>Potri.010G227100.4 pacid=42799490 polypeptide=Potri.010G227100.4.p locus=Potri.010G227100 ID=Potri.010G227100.4.v4.1 annot-version=v4.1 MGIFDGLPVPPDKAQYLREELSRIDESWAAARFDSLPHVVHILTSKDREAEAQVLKEQSDVVEDVVDEVVQSYHSGFNKAIQNYSQILRLFSESAESIAS LKVDLAEAKKRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAEKQFYAAVQLHAHSSLMLEREGLQMVGALQDVRSELTKLRGVVFYK ILEDLHAHLYNKGEYSSVASSMYERDDELPTTIAVFTMSNSQSLSRRTRLMKGDNHSFADGSYKPSSIDGGSSFDGHDEDLDITDEATSDGHTASVRTNG GDGNMKDIKVGSRQIPSWLSNSTPDEFIETIKKSDAPLHVKYLQTMVECLCMLGKVAAAGAIICQRLRPTIHDIITSKIKSHSELVNSSRSSINQSAQTR GLHFVKGQLESYKLPKQKRQNGTLLAVSPVSPVMAPTGKAQAAAKELLDSILDTVIRIFENHVVVGELLEFKTSQNVDLNAPGSLTTDLNWNLDSEASQV IGGYSIGFSLTVLQSECQQLICEILRATPEAASADASVQTARLASKAPSKGKKDGSEDGLSFAFRFTDATISIPNQGVDLIRQGWSRKGPNVLQEGYGSA AVLPELGIYLAASVYRPVLQFTDKLASMLPKNYSQFGNDGLLAFVENFVKDHFLPTMFVDYRKGVQQAISSPAAFRPRAHTVAPYTPSIEKGRPVLQGLL AIDFLAKEVLGWAQAMPKFAGDLVKFVQTFLERTYERCRTSYMEAVLEKQSYMLIGRHDIEKLMRFDPASAYLPNSLGQSSMVNNASGAESIEIELELSE ILLNLRPIKQENLIRDDNKLILLASLSDSLEYVADSIERLGQITSRSSNQVADKAKTLAAFADDYRKLAIDCLKVLHVEMKLETIFHMQEMTNREYLEDQ DAEEPDDFVIALTAQITRRDEEMAPFVAAVKQNYIFGGICSIAANASIKALADMKSINLFGVQQICRNSIALEQALAAIPSMDSEAVQQRLDHVRTYYEL LNMPFEALLAFITEHENLFTPAEYANLLKVNVLGREIPPDAQDRVSYILSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.010G227100 [exp]	0	1
AT4G38120			ARM repeat superfamily protein...		Potri.001G454200 [exp]	1.00	0.9206
AT3G04490			unknown protein		Potri.019G019100 [exp]	3.46	0.8675
AT3G11130			Clathrin, heavy chain (.1)		Potri.008G070600 [exp]	4.00	0.8525
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.008G035300 [exp]	4.69	0.8381
AT3G01380			transferases;sulfuric ester hy...		Potri.001G350700 [exp]	5.47	0.8376
AT5G58510			unknown protein		Potri.009G076000 [exp]	6.24	0.8380
AT2G46560			transducin family protein / WD...		Potri.002G173300 [exp]	7.74	0.8381
AT5G45610		SUV2	SENSITIVE TO UV 2, protein dim...		Potri.003G098700 [exp]	8.71	0.8273
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Potri.004G137100 [exp]	9.38	0.8251
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Potri.018G081400 [exp]	9.79	0.8221

Compare expression of checked genes

Potri.010G227100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.