Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10390 1135 / 0 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT1G62830 764 / 0 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G13682 713 / 0 LDL2 LSD1-like2 (.1) AT4G16310 298 / 6e-85 LDL3 LSD1-like 3 (.1) AT1G65840 189 / 1e-51 ATPAO4 polyamine oxidase 4 (.1) AT2G43020 174 / 1e-46 ATPAO2 polyamine oxidase 2 (.1) AT3G59050 159 / 2e-41 ATPAO3 polyamine oxidase 3 (.1) AT4G29720 128 / 7e-31 ATPAO5 polyamine oxidase 5 (.1) AT5G13700 90 / 2e-18 ATPAO1, APAO polyamine oxidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G035200 [exp] 1486 / 0 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.002G013100 [exp] 779 / 0 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Potri.011G127600 [exp] 719 / 0 AT3G13682 959 / 0.0 LSD1-like2 (.1) Potri.005G235400 [exp] 310 / 8e-89 AT4G16310 1192 / 0.0 LSD1-like 3 (.1) Potri.002G027100 [exp] 307 / 1e-87 AT4G16310 1504 / 0.0 LSD1-like 3 (.1) Potri.004G075800 [exp] 191 / 1e-52 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.017G144001 [exp] 189 / 8e-52 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.002G055300 [exp] 171 / 2e-45 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.005G207300 [exp] 164 / 5e-43 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017464 [exp] 1226 / 0 AT3G10390 1198 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10028817 [exp] 877 / 0 AT3G10390 808 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10015996 [exp] 782 / 0 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10012283 [exp] 774 / 0 AT1G62830 984 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10037885 [exp] 696 / 0 AT3G13682 969 / 0.0 LSD1-like2 (.1) Lus10038587 [exp] 696 / 0 AT3G13682 971 / 0.0 LSD1-like2 (.1) Lus10033928 [exp] 320 / 5e-92 AT4G16310 1391 / 0.0 LSD1-like 3 (.1) Lus10024311 [exp] 318 / 3e-91 AT4G16310 1471 / 0.0 LSD1-like 3 (.1) Lus10020726 [exp] 171 / 2e-45 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1) Lus10029804 [exp] 167 / 5e-44 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF04433 [poplar] [flax] SWIRM SWIRM domain CL0063 [poplar] [flax] NADP_Rossmann PF13450 [poplar] [flax] NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence Show only first row Show all	>Potri.010G227200.1 pacid=42799725 polypeptide=Potri.010G227200.1.p locus=Potri.010G227200 ID=Potri.010G227200.1.v4.1 annot-version=v4.1 ATGAATCCACCATCACCAACCCCCGACGAATTCTCGTCTCTTCCTCTCGAATTCGTCCCCTACCCTCCTCTACCTCCACAAACCACCCCTACTCCCATAC AAACCCCACCCGCACCCGCATTCGCGCTTCCAAATCCGAACGCTGCATTCCCCTCATTTCCCATTCCCAAGAAACGCCGCCGTGGCCGTCCCCAAAAAAC CCAAACCTCCTTTCACTTCCCCCAATTTTTTCCACCCAAAGCCGCACAAAACCAACAACAAAAAAAACTAGTCCCTGATATTTCAGAAGAAATCATAGTA ATCAACAAAGAATCAACAAACGAAGCCTTAATTGGTCTCTCTGCTGGATTCCCTGCTGATTCCTTAACTGACGAAGAAATAGATGCCCGTGTGGTCACGA ATATCGGCGGAATCGAACAGGTTAATTACATTTTAATTAGGAATCATATAATTGCGAAATGGCGCGAGAATGTTAATGTTTGGGTGACTCAAGAAATGTT TCTTAATTCCGTGCCGATACATTGTCATGGGTTGTTAGATTCTGCTTACGATTATCTAGTTTCGCACGGGTATATTAATTTTGGGGTTTCGCAGTCGATA AAAGAAAGATTCCCCAATGAGTATACGAAGTCGAATGTGATTGTTGTTGGGGCAGGATTGGCGGGGTTGAGTGCGGCGAGGCAGTTAATGAGGTTGGGAT TTAAGGTTACAGTTTTAGAAGGGAGGAAGCGTGCGGGCGGGAGAGTTTATACTATGAGAATGGAAGGGGGAGCGGGGAATAGGGTGAGTGCATCGGTGGA TTTAGGAGGGAGTGTTTTGACGGGGACATTGGGGAATCCGTTGGGGATTTTAGCAAGGCAGTTGGGGTTTTGGATGCATAAGGTGAGGGATAAGTGTCCA CTTTATAGTGTGGGTGGGAGACCAGTTGATTTGGATATGGATATGAAGGTTGAGACAGCATTTAATAGGTTGTTGGATAAAGCAAGTAGACTTAGGCAGT TGATGGGGGATGTCTCAGTGGATGTGTCATTGGGGGCTGCGTTGGAAACGTTTAGGCAGGTTTATGAGGATGCTGTGAATAAGGAGGAGATCAATTTGTT TAATTGGCATTGTGCTAATTTGGAGTATGCCAATGCAGGTTTGTTGTCGAAGTTATCATTGGCATTTTGGGACCAGGATGACCCGTATGACATGGGAGGG GATCATTGTTTTTTGCCTGGAGGGAATGGGAGGTTGGTTCAGGCTTTAGCTGAGAATGTACCAATTTTGTATGAGAAGACTGTGCATACTATTAGGTATG GGAGTGATGGGGTGCAGGTTATTGCGGGCAGCCAAGTCTTCGAGGGGGATATGGTGTTGTGTACGGTTCCTCTTGGAGTGTTGAAGAGTGGGTCGATCAA GTTTATTCCTGAGTTGCCACAGAGGAAGCTTGATGGGATAAAAAGGTTGGGATATGGACTGCTGAATAAGGTTGCGATGCTTTTTCCTTGCGTGTTTTGG GAAACTGACCTGGACACGTTTGGACATTTGACTGACGATACGAGTTCTCAAGGGGAGTTCTTCTTGTTTTATAGCTATGCAACTGTTGCTGGTGGTCCAA TCTTGATTGCTTTGGTAGCAGGGGAAGCTGCTCATAAATTTGAGAGTATGCCACCTACGGATGCAGTGACCAAGGTTATTCAAATCCTCAAGGGTATTTA TGAACCTCAAGGAATCACTGTCCCAGAGCCTATCCAAACTGTCTGCACAAGATGGGGCAGTGATCCATTTACCCTTGGTTCTTACTCTAATGTTGCGGTA GGGGCATCAGGAGATGACTATGATATATTAGCAGAAAGTGTGGGAGATGGAAGACTTTTCTTTGCAGGGGAGGCCACAAATAGGCGATATCCTGCAACTA TGCATGGAGCTTTTCTCAGTGGGTTAAGAGAAGCTGCAAACATGATTCACTATGCTGGCACTCGAGCCTCAAGGATGAAGGTTAATCGGACCCCATCAAA GAATGCCCACACTTGTGCTTCCCTTCTTGCAGATTTATTTAGGGAGCCAGATATAGAGTTTGGGAGTTTTTCTGTTATTTTTGGCAGAAAGAATCCTGAC CCGAAGTCAACAGCAATTTTAAGGGTGACATTTAGTGAACCTCGAAAGAAGAGCCAGGAAGGTTCTAGGCCAGATCAACGGCATTCCAATAAGTTACTTT TTCAGCAGCTTCAGTCACATTTCAATCAGCAACAACCACTTCATGTGTACACTTTATTGTCCAAACAACAGGCGCTTGAGTTGAGAGAGGTGAGAGGGGG TGATGAAACGAGGATGAATTATCTCTGTGAGAAGCTAGGAGTGAAATTGATTGGGAGAAAGGGTTTGGGGCCTACAGCTGATTCACTCATTGCATCTATT AAAGCTGAGAGAGGTGGGCACAAAACCCCTGCTACTTCTTTGGGTCTAAAATCAGGGATGTCCAAACTACAAAAGGTCACTTTGAAGCGAAAACTGGTCA GGAGAGCTAAAATAGTGCGCAGCAGCAATAAGTATGTGCCTCCTCCGAATTTGAACATGGTAAATGTTAAGGTGTTAGAAGAAATTCGGACAACAAATCA GGCACCTCCTGAAAGGAATAGTACAGGACAAATTCAAGTGGACATGTTGAAGAATGAACAGACAGCACCCTCCTGA
AA sequence Show only first row Show all	>Potri.010G227200.1 pacid=42799725 polypeptide=Potri.010G227200.1.p locus=Potri.010G227200 ID=Potri.010G227200.1.v4.1 annot-version=v4.1 MNPPSPTPDEFSSLPLEFVPYPPLPPQTTPTPIQTPPAPAFALPNPNAAFPSFPIPKKRRRGRPQKTQTSFHFPQFFPPKAAQNQQQKKLVPDISEEIIV INKESTNEALIGLSAGFPADSLTDEEIDARVVTNIGGIEQVNYILIRNHIIAKWRENVNVWVTQEMFLNSVPIHCHGLLDSAYDYLVSHGYINFGVSQSI KERFPNEYTKSNVIVVGAGLAGLSAARQLMRLGFKVTVLEGRKRAGGRVYTMRMEGGAGNRVSASVDLGGSVLTGTLGNPLGILARQLGFWMHKVRDKCP LYSVGGRPVDLDMDMKVETAFNRLLDKASRLRQLMGDVSVDVSLGAALETFRQVYEDAVNKEEINLFNWHCANLEYANAGLLSKLSLAFWDQDDPYDMGG DHCFLPGGNGRLVQALAENVPILYEKTVHTIRYGSDGVQVIAGSQVFEGDMVLCTVPLGVLKSGSIKFIPELPQRKLDGIKRLGYGLLNKVAMLFPCVFW ETDLDTFGHLTDDTSSQGEFFLFYSYATVAGGPILIALVAGEAAHKFESMPPTDAVTKVIQILKGIYEPQGITVPEPIQTVCTRWGSDPFTLGSYSNVAV GASGDDYDILAESVGDGRLFFAGEATNRRYPATMHGAFLSGLREAANMIHYAGTRASRMKVNRTPSKNAHTCASLLADLFREPDIEFGSFSVIFGRKNPD PKSTAILRVTFSEPRKKSQEGSRPDQRHSNKLLFQQLQSHFNQQQPLHVYTLLSKQQALELREVRGGDETRMNYLCEKLGVKLIGRKGLGPTADSLIASI KAERGGHKTPATSLGLKSGMSKLQKVTLKRKLVRRAKIVRSSNKYVPPPNLNMVNVKVLEEIRTTNQAPPERNSTGQIQVDMLKNEQTAPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Potri.010G227200 [exp]	0	1
					Potri.017G112500 [exp]	7.07	0.6854
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.002G027100 [exp]	8.83	0.7480
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Potri.008G111100 [exp]	11.74	0.7277
AT4G03000			RING/U-box superfamily protein...		Potri.010G027900 [exp]	14.69	0.6895
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.014G013100 [exp]	17.26	0.7295
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.009G085400 [exp]	19.33	0.6991
AT3G23900			RNA recognition motif (RRM)-co...		Potri.017G058300 [exp]	21.54	0.7157
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Potri.008G032800 [exp]	22.09	0.7252
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.003G022100 [exp]	27.38	0.7249	CHR928,PIE1.4
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Potri.008G037800 [exp]	27.56	0.6644

Compare expression of checked genes

Potri.010G227200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.