Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39170 214 / 2e-69 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G035000 [exp] 436 / 8e-156 AT2G39170 196 / 1e-61 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040608 [exp] 252 / 4e-84 AT2G39170 180 / 2e-56 unknown protein Lus10028816 [exp] 234 / 1e-76 AT2G39170 176 / 1e-54 unknown protein Lus10017465 [exp] 231 / 1e-75 AT2G39170 177 / 3e-55 unknown protein Lus10018298 [exp] 220 / 1e-71 AT2G39170 163 / 6e-50 unknown protein Lus10037961 [exp] 116 / 3e-32 AT2G39170 98 / 1e-25 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10167 [poplar] [flax] BORCS8 BLOC-1-related complex sub-unit 8
Representative CDS sequence Show only first row Show all	>Potri.010G227400.2 pacid=42797401 polypeptide=Potri.010G227400.2.p locus=Potri.010G227400 ID=Potri.010G227400.2.v4.1 annot-version=v4.1 ATGCATGGATTCTCCACGGTCGATGGCTTTGTGGAGATAACTGAAAGCTTGGCTGAGATGATTAAGTACGTGGCAAATGAACCCTCAGTAGGGCTCTTCT ATGTTCAGCAGCATGCTCAAAATGCAATTCCGAATGTCATTAGGCTCAAGAATAATGTTGTGGAGAAGTCACGTGCAACAAATCTGCACACTGAAGACTT GGAGGATTGTATCACCATGGTGAAGTCAATGAAAGAATGTGGTTTCCCTGTTGCTGATGAGATGATTAGAGACATCAGGAAATCTTTAGCAACAATGTCA GCTAAACAACCAAGAAGAGGATTAATTAATAGCCCAGTTTCAGGTTTTCAGATGGGAAGAACCAGCTCACTGGGACTTGGCACTTGGGGTCGTAATGGAG ATGATGCCGAGAAGGATGGCAAAAGGACGAGCAATTACTTTTCAACTGTATTTAAGACTGCCAAAGAAAAGGCAAGCAATTTCAAGTGGCCACCACTTGA TTCGAAAGAATCAACCACAAACCAGGCAGAAAAACTACTGTCTTGTCCTACTTCATCACAATCGGTCACTAGCACTGGCTCGTCTCTGCCTGATGTGGAA GCTGATGAATTGCCCTTGTCAAGTCCGACTGCTGGTGGACAACAATTAGATGAAGAAGAGGATCAATTTGGTGTGAACTTGCCACGTCATAATATATTGT TGTTAACAGAGAACTTCGATGACTTCAAGGCTGATAAGGAAGCCAAGCTAGAGGAGTGGTTGGGAGGGACTGCTGACAACCTAGATAAACTGCAGGAGGG CAAATGA
AA sequence Show only first row Show all	>Potri.010G227400.2 pacid=42797401 polypeptide=Potri.010G227400.2.p locus=Potri.010G227400 ID=Potri.010G227400.2.v4.1 annot-version=v4.1 MHGFSTVDGFVEITESLAEMIKYVANEPSVGLFYVQQHAQNAIPNVIRLKNNVVEKSRATNLHTEDLEDCITMVKSMKECGFPVADEMIRDIRKSLATMS AKQPRRGLINSPVSGFQMGRTSSLGLGTWGRNGDDAEKDGKRTSNYFSTVFKTAKEKASNFKWPPLDSKESTTNQAEKLLSCPTSSQSVTSTGSSLPDVE ADELPLSSPTAGGQQLDEEEDQFGVNLPRHNILLLTENFDDFKADKEAKLEEWLGGTADNLDKLQEGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39170			unknown protein		Potri.010G227400 [exp]	0	1
AT4G32915			unknown protein		Potri.018G058200 [exp]	14.24	0.8309
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.005G232700 [exp]	15.09	0.8041
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Potri.010G073700 [exp]	15.16	0.8231
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Potri.005G179600 [exp]	16.97	0.8199
AT5G53850			haloacid dehalogenase-like hyd...		Potri.001G399000 [exp]	22.36	0.7962
AT4G01995			unknown protein		Potri.002G194500 [exp]	26.15	0.8229
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Potri.004G089500 [exp]	29.66	0.7791
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Potri.002G243700 [exp]	29.93	0.8102	Pt-EU3.1
AT5G10810		ATER	ARABIDOPSIS THALIANA ENHANCER ...		Potri.018G017300 [exp]	30.82	0.8072
AT5G63520			unknown protein		Potri.012G100500 [exp]	32.00	0.7880

Compare expression of checked genes

Potri.010G227400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.