Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10400 223 / 7e-73 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT4G20030 75 / 1e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G64200 67 / 8e-13 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT3G23830 63 / 1e-12 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT3G08000 63 / 3e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G23860 62 / 1e-11 SRZ21, SRZ-21, RSZP21, RSZ21, At-RSZ21 RS-containing zinc finger protein 21 (.1.2.3.4) AT4G13860 59 / 2e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G53720 62 / 9e-11 ATCYP59, CYP59 cyclophilin 59 (.1) AT5G59950 59 / 1e-10 RNA-binding (RRM/RBD/RNP motifs) family protein AT1G60650 60 / 2e-10 AtRZ-1b AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G074900 [exp] 71 / 4e-15 AT4G20030 164 / 2e-52 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G023800 [exp] 64 / 4e-12 AT5G64200 207 / 4e-66 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.014G157300 [exp] 62 / 5e-12 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.019G050600 [exp] 62 / 8e-12 AT1G23860 131 / 3e-39 RS-containing zinc finger protein 21 (.1.2.3.4) Potri.005G165400 [exp] 62 / 4e-11 AT5G64200 202 / 2e-63 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.002G095800 [exp] 61 / 4e-11 AT5G64200 204 / 5e-65 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.016G093944 [exp] 61 / 7e-11 AT5G59950 196 / 1e-62 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.012G038200 [exp] 59 / 9e-11 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G203200 [exp] 60 / 1e-10 AT3G55460 144 / 1e-41 SC35-like splicing factor 30 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037960 [exp] 264 / 6e-89 AT3G10400 240 / 2e-79 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Lus10038693 [exp] 254 / 2e-85 AT3G10400 244 / 6e-81 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Lus10006936 [exp] 63 / 3e-12 AT4G20030 137 / 4e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015146 [exp] 62 / 6e-12 AT3G08000 145 / 5e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002699 [exp] 64 / 8e-12 AT3G55460 138 / 3e-39 SC35-like splicing factor 30 (.1) Lus10003957 [exp] 63 / 2e-11 AT5G64200 217 / 9e-70 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10031534 [exp] 61 / 2e-11 AT3G08000 146 / 2e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023191 [exp] 62 / 4e-11 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10002222 [exp] 62 / 4e-11 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023802 [exp] 62 / 5e-11 AT5G64200 217 / 1e-68 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Potri.010G227500.4 pacid=42799945 polypeptide=Potri.010G227500.4.p locus=Potri.010G227500 ID=Potri.010G227500.4.v4.1 annot-version=v4.1 ATGGGGAAGAAGCAAAAACGCAACAGTGACAGTGACGAAGATGAAATATTTTACCACCGCTACTCCTCCGCCACCACATCATCACAACACCCACCTTCCT CCACCAAACCCCACGGCGGATCCGGCGGTTTAGCACCATCAAAATCAACCCTGTACGTATCCAATTTGGACTTCTCCCTTACAAACTCAGACCTCCACAC ACTCTTCTCCACCTTCGGCAAAGTAGCACGTGTAACTGTCTTAAAAGACCGAACAACACGGAAATCGCGCGGTGTCGCATTCATCCAATTCGTATCTCGC AGCGACGCGGTCACCGCCGTTGAACAGATGGACAAGAAGATTCTCAATGGGAGAACTCTGTCGGCGTCGATTGCGGCAGATAATGGTAGAGCGACGGAGT TTATTAAGAAGAGGGTTTATAAGGATAAGAGTAAGTGTTATGAGTGTGGAGAAGATGGACATTTGAGTTATGAGTGTCCGAGGAATCGATTGGGGATTAG AGAGAGGCCTGTGGTGAAGAGAGGGAGGGGAGGCGGTGGTGGAGGAGGTGGCGGCGGCGGAAGGGGCGGGGGAGATTGGGAGGAGGAGGAAGAAGAGGGC GAGTTTGAGGAGGAGAAGTGGGCTGCGGCGGTGGATGGAGGGGTGGAGGAGAGGTTGTTGAAGGGGGGAGAGGTGGAGAAAAAGAAGGTGAAGGTTAAGA AAGCTAGTTACTTCAGTGATGAGAGTGATGAAGAGGAGTGA
AA sequence Show only first row Show all	>Potri.010G227500.4 pacid=42799945 polypeptide=Potri.010G227500.4.p locus=Potri.010G227500 ID=Potri.010G227500.4.v4.1 annot-version=v4.1 MGKKQKRNSDSDEDEIFYHRYSSATTSSQHPPSSTKPHGGSGGLAPSKSTLYVSNLDFSLTNSDLHTLFSTFGKVARVTVLKDRTTRKSRGVAFIQFVSR SDAVTAVEQMDKKILNGRTLSASIAADNGRATEFIKKRVYKDKSKCYECGEDGHLSYECPRNRLGIRERPVVKRGRGGGGGGGGGGGRGGGDWEEEEEEG EFEEEKWAAAVDGGVEERLLKGGEVEKKKVKVKKASYFSDESDEEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10400		U11/U12-31K	U11/U12-31K, RNA recognition m...		Potri.010G227500 [exp]	0	1
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.005G164100 [exp]	8.18	0.8999
AT5G43490			unknown protein		Potri.017G058600 [exp]	10.29	0.8979
AT5G43490			unknown protein		Potri.017G058500 [exp]	14.59	0.8940
AT5G67170			SEC-C motif-containing protein...		Potri.005G140500 [exp]	18.49	0.7620
AT3G05670			RING/U-box protein (.1)		Potri.013G011400 [exp]	18.49	0.8875
AT5G48610			unknown protein		Potri.017G058701 [exp]	21.09	0.8904
AT5G43490			unknown protein		Potri.001G319500 [exp]	21.16	0.8905
AT1G03350			BSD domain-containing protein ...		Potri.010G028801 [exp]	25.90	0.8295
AT5G41020	MYB		myb family transcription facto...		Potri.015G095000 [exp]	28.12	0.8694
AT1G76810			eukaryotic translation initiat...		Potri.012G039200 [exp]	30.46	0.8615

Compare expression of checked genes

Potri.010G227500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.