Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10410 730 / 0 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT3G45010 676 / 0 SCPL48 serine carboxypeptidase-like 48 (.1) AT5G22980 601 / 0 SCPL47 serine carboxypeptidase-like 47 (.1) AT5G22960 204 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) AT1G15000 194 / 3e-56 SCPL50 serine carboxypeptidase-like 50 (.1) AT1G73300 174 / 9e-49 SCPL2 serine carboxypeptidase-like 2 (.1) AT4G12910 174 / 3e-48 SCPL20 serine carboxypeptidase-like 20 (.1) AT3G25420 172 / 9e-48 SCPL21 serine carboxypeptidase-like 21 (.1) AT1G73290 166 / 1e-45 SCPL5 serine carboxypeptidase-like 5 (.1) AT3G12203 164 / 4e-45 SCPL17 serine carboxypeptidase-like 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034800 [exp] 932 / 0 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.004G215400 [exp] 680 / 0 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.005G060100 [exp] 205 / 4e-60 AT1G15000 523 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G129800 [exp] 182 / 8e-52 AT1G15000 529 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G129850 [exp] 177 / 4e-50 AT1G15000 524 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.009G006701 [exp] 163 / 2e-48 AT3G45010 171 / 7e-52 serine carboxypeptidase-like 48 (.1) Potri.012G105500 [exp] 172 / 6e-48 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 164 / 5e-45 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 163 / 1e-44 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037958 [exp] 785 / 0 AT3G10410 728 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10038691 [exp] 764 / 0 AT3G10410 711 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10017466 [exp] 734 / 0 AT3G10410 689 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10041339 [exp] 607 / 0 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10041338 [exp] 416 / 7e-143 AT3G45010 460 / 3e-160 serine carboxypeptidase-like 48 (.1) Lus10037381 [exp] 411 / 2e-140 AT3G10410 456 / 2e-158 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10037380 [exp] 209 / 3e-65 AT3G45010 216 / 1e-68 serine carboxypeptidase-like 48 (.1) Lus10042334 [exp] 198 / 1e-57 AT1G15000 439 / 5e-152 serine carboxypeptidase-like 50 (.1) Lus10026331 [exp] 196 / 1e-56 AT1G15000 435 / 2e-150 serine carboxypeptidase-like 50 (.1) Lus10041000 [exp] 185 / 2e-52 AT1G15000 473 / 2e-165 serine carboxypeptidase-like 50 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.010G227700.3 pacid=42797571 polypeptide=Potri.010G227700.3.p locus=Potri.010G227700 ID=Potri.010G227700.3.v4.1 annot-version=v4.1 ATGGAGAACCTGAATTTCCTTTCTGTCATTCTCCTGTCACTTATCGCGATATCTCACGCGAGAATACCAGACAATCCTTATCTCAATCTCGAGAGGTCGA ATTTTCCGTCCGTACAAGCAGGGAAGATGATAAGGGAGCTGAATTTGTTTCCAAAATCAGAAGTCAACGTGATCGGCGGTGGTGATGATGGTGCTGGTGC TATTAGCGAGTCAGGGCACAATAAGAGGATTGTAGAGAGGAAATTTAGGTTTCCTAATGTAGTTGGTGACGAGGAAGAAAGCTTTACCGTTGATGATTTG GGGCATCATGCTGGCTATTACAAGATTGAGCATTCTCATGATGCTAGGATGTTCTACTTTTTCTTTGAATCAAGGACCAGCAAGAAGGATCCTGTGGTCA TTTGGTTGACAGGAGGACCAGGGTGTAGCAGTGAATTGGCTATGTTTTATGAAAATGGTCCTTACACTATTGCAAATAACCTGTCACTTGTGCGAAATGA GTATGGTTGGGACAAGGTGTCAAATCTTCTATATGTTGACCAACCCACTGGTACTGGATACAGTTATAGTAGTGATAGGCGTGACATTCGTCACAATGAA GGTGGAGTTAGTAATGATCTATATGACTTCTTACAGGCCTTCTTCGAGGAGCATCCTGAATTGGCAGAGAATGACTTCTACATAACTGGAGAATCATACG CTGGACACTATATTCCTGCTTTTGCAGCTCGGGTCCACAAAGGAAACAAAGCTAAAGAAGGAATTCATGTAAACCTCAAGGGATTTGCCATTGGTAATGG GCTTACTGATCCTGCAATCCAATATAAAGCATACACAGATTATGCACTGGATATGGGAATAATTAAACAAGCTGAGCATGATCGCATCAACAAGATAGTT CCAGCCTGTGAAGTGGCAATAAAGCTTTGTGGCACTGATGGTACAGTCTCTTGCTTGGCCTCCTATTTAGTTTGCAATACCATATTCAGCAGCATCTTAT CAGTTGCTGGTAATATAAATTATTATGATGTTAGAAAGAAATGCGAGGGGAGCCTCTGCTATGACTTCTCAAATATGGAGAAATTTCTGGGCCAGAAATC TGTTAAGGAGGCACTTGGTGTTGGGGATATAGACTTTGTCTCCTGTAGCACTACAGTCTATATGGCGATGCTTACAGACTGGATGAGGAATCTTGAAGTG GGCATTCCTGCTCTTCTTGAGGATGGAGTCAAGTTGCTTGTGTATGCTGGAGAATATGATCTCATCTGCAACTGGCTCGCAGGTAATTCAAGATGGGTTC ATGCCATGGAGTGGTATGGTCAGAAAGAGTTTGTGGCATCTCCTGAAGTTCCTTTTGAAGTTAGTGGTTCAGAAGCTGGAGTGCTGAAAAGTTATGGGCC TCTCGCATTCCTTAAGGTCCACAATGCAGGGCACATGGTTCCCATGGACCAGCCCGAGGCTTCATTAGAGATGCTGAAGAGGTGGACTCAAGGCAAATTG TCGGAAGTCACACAGGAGCCCCAGCAATTGGTTGCTGAGATGTGA
AA sequence Show only first row Show all	>Potri.010G227700.3 pacid=42797571 polypeptide=Potri.010G227700.3.p locus=Potri.010G227700 ID=Potri.010G227700.3.v4.1 annot-version=v4.1 MENLNFLSVILLSLIAISHARIPDNPYLNLERSNFPSVQAGKMIRELNLFPKSEVNVIGGGDDGAGAISESGHNKRIVERKFRFPNVVGDEEESFTVDDL GHHAGYYKIEHSHDARMFYFFFESRTSKKDPVVIWLTGGPGCSSELAMFYENGPYTIANNLSLVRNEYGWDKVSNLLYVDQPTGTGYSYSSDRRDIRHNE GGVSNDLYDFLQAFFEEHPELAENDFYITGESYAGHYIPAFAARVHKGNKAKEGIHVNLKGFAIGNGLTDPAIQYKAYTDYALDMGIIKQAEHDRINKIV PACEVAIKLCGTDGTVSCLASYLVCNTIFSSILSVAGNINYYDVRKKCEGSLCYDFSNMEKFLGQKSVKEALGVGDIDFVSCSTTVYMAMLTDWMRNLEV GIPALLEDGVKLLVYAGEYDLICNWLAGNSRWVHAMEWYGQKEFVASPEVPFEVSGSEAGVLKSYGPLAFLKVHNAGHMVPMDQPEASLEMLKRWTQGKL SEVTQEPQQLVAEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Potri.010G227700 [exp]	0	1
AT4G29850			Eukaryotic protein of unknown ...		Potri.006G072000 [exp]	1.73	0.7458
AT3G07580			unknown protein		Potri.014G172600 [exp]	2.44	0.7089
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Potri.001G250400 [exp]	7.21	0.6571	Pt-ATPH1.2
AT3G24315		ATSEC20	Sec20 family protein (.1)		Potri.010G064900 [exp]	8.66	0.6514
AT1G51200			A20/AN1-like zinc finger famil...		Potri.001G018600 [exp]	9.64	0.6854
AT2G46270	bZIP	GBF3	G-box binding factor 3 (.1.2)		Potri.002G167100 [exp]	19.36	0.5811	Pt-GBF3.2
AT5G04270			DHHC-type zinc finger family p...		Potri.010G226100 [exp]	23.23	0.5697
AT5G59140			BTB/POZ domain-containing prot...		Potri.009G037800 [exp]	24.81	0.6017
AT3G08890			Protein of unknown function, D...		Potri.016G125300 [exp]	37.30	0.5548
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Potri.016G138900 [exp]	37.62	0.5964

Compare expression of checked genes

Potri.010G227700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.