Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03450 357 / 6e-115 Transducin/WD40 repeat-like superfamily protein (.1) AT5G03750 63 / 2e-11 unknown protein AT1G67180 49 / 9e-06 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) AT2G03000 48 / 2e-05 RING/U-box superfamily protein (.1) AT5G37230 44 / 0.0001 RING/U-box superfamily protein (.1) AT1G26800 43 / 0.0002 RING/U-box superfamily protein (.1) AT4G01270 44 / 0.0003 RING/U-box superfamily protein (.1) AT1G53190 44 / 0.0003 RING/U-box superfamily protein (.1.2) AT1G74620 43 / 0.0003 RING/U-box superfamily protein (.1) AT2G42030 44 / 0.0004 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122800 [exp] 448 / 2e-150 AT5G03450 473 / 6e-160 Transducin/WD40 repeat-like superfamily protein (.1) Potri.016G058300 [exp] 50 / 3e-06 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.007G086300 [exp] 45 / 3e-05 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.019G086500 [exp] 43 / 0.0002 AT4G05350 64 / 2e-12 RING/U-box superfamily protein (.1) Potri.006G193600 [exp] 44 / 0.0003 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4) Potri.005G081200 [exp] 42 / 0.0004 AT1G15100 74 / 3e-17 RING-H2 finger A2A (.1) Potri.010G092300 [exp] 42 / 0.0008 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1) Potri.014G139400 [exp] 42 / 0.0009 AT3G58720 163 / 3e-49 RING/U-box superfamily protein (.1.2) Potri.006G274700 [exp] 42 / 0.001 AT5G24870 263 / 4e-81 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013821 [exp] 400 / 1e-131 AT5G03450 459 / 1e-154 Transducin/WD40 repeat-like superfamily protein (.1) Lus10026534 [exp] 246 / 4e-74 AT5G03450 317 / 3e-101 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016255 [exp] 48 / 2e-05 AT3G58030 362 / 2e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10025671 [exp] 45 / 0.0001 AT3G13228 74 / 4e-15 RING/U-box superfamily protein (.1) Lus10029292 [exp] 45 / 0.0002 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4) Lus10012819 [exp] 44 / 0.0003 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10012745 [exp] 43 / 0.0005 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10021063 [exp] 43 / 0.0006 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10018167 [exp] 42 / 0.0006 AT3G19950 75 / 1e-15 RING/U-box superfamily protein (.1) Lus10015126 [exp] 41 / 0.0008 AT3G05870 156 / 2e-50 anaphase-promoting complex/cyclosome 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.010G228000.2 pacid=42800092 polypeptide=Potri.010G228000.2.p locus=Potri.010G228000 ID=Potri.010G228000.2.v4.1 annot-version=v4.1 ATGGCTGACAACGGCCATGGCAACAGTTACTTATCTTTTGGTTCAACAAACAGACAAGAAAACATCGGTACAATGTTAGCGTCTTTACGTATAGAAATTC GACCACAAGAACAAGGTGGAAGAGAAGTTCCATTTATGTTTCGTTCTTCCAGATCATCTACCACTTATGGTGATGGTGATCAGAGTACTCCGATGGTGAT TGACAGTGAATCTGTAGAAGGAGGAGAAAGAGGAAGCAATGAAAGAAGAATAGAAGAGAGAGATGGGTTTTCTTTAACAAGGAAAGAGAATGAGGGTACT GTTGAAGAAGCAAAGAGAAGAGAAGATACAGTGGAGGAATATGATTTGGATGGATTGAATTGTGCTATTTGTATGGAGCCTTGGAGGTCTGAAGGTGATC ATCAAGTCAGCTGCCTTCCTTGTGGACATTTGTACGGTTTTTCTTGCATTAGTAAGTGGCTTCAACGACCGGTGCCTACTACGAAGTGTCCTCAATGCAA TGCAAAGTGCAAATTCAAGGATATTAGAAAGCTATATACAACACCAGTGGTAGTTATTGATGAAGGGCTACAAAAGAAAGTTGAATCTCTTGAGGATGAA ATTGGCTCCCTTAAGACAGAGAAATCTGATTTGCTTGATATACAAGATAACTTGCTCGAAATACAAGATAATTTGCTCAAGTTATTACGCAACCTCAAGG AAAAACCAGCTTGTACAGAGAACACATCATTTGAGCAGATGGGAAGTAAACCTCATCAATTCTTTAATGCAAAAGAAGCTCAGGGTGCACAATCTGGATG TTCCTTCGGCTCATATTCTTCCAAACAACTCCTCCATTGCAACTTTAAATTACAGCATGAGTTGGCCATAGAAGGTGGAAGGCTGTTTGCCATGGACTTC TCTTATCAAAATCTGATTCTCACTCGAAGAATTGCTGGGATGGGTGGGATGCATATGCTCAACAAGATTAACTTGATTAATCCTCGTGAAAATGAAGATA TACAGCTTCCTCCTAGCACCAAAGCTGTCAAGGATATACAAATTTCTCCTTGTGGTAAACTCACCCTTTTGGCTTCACTTGGGAAGAAATTATCAATACT TAGCATGGAAAGCAACAATATTGTCGTGACCTATAATCTAAGGGTCCCAGCTTGGTCATGTTCATGGGATCTAAACAGCCCTCATTATGTGTATGCTGGC TTACAGAATGGCATGCTTTTAGTATTTGACATGCGCGGGACCCTGAATCCTCTGCAGTCCATGGTTGGACCAGTGCCCGGGCCAATTCACACTATGCACC CCCTTGCACAAAACCCTGTTCTTGGTTCCAATTCTCAGAAACTGCTTACAGCTTCCTCTTTGGGACCATGCGTCTGGAACACTGATGCTGGAAAAAGGCC ATTTCTGGTTCCTGGATTTGAAAATCAAGGGATTTGCACTTCACTTGCTTATGGTCCATTAAGCGATGACATTGTTGCTTCATATCATCCCAAATCCAAG AAATCAAATGCTACGGTTAATTCCCAATGTATAGATCCAGATTCATCCCCTTTTCCAGGATCAGCCACACTGTGTTCTCAACTTCTTGTCAAGAGAATAG CTGATAGCCATTATCGTAACTTGGGATCTACATCTGCCTATTTAAGCAATGGTCAAATGGCAAGGACTGCGATTATAAACATGCAGAATTGCTTCCCCTT GTTTGCCTATGGAGATGAAGCAACCCGAGGATTGAGGTTGAAAGAATTACCAAGTTTCAATGTGACCCAGAATCTTAAACCACATCATCACCCCATCCTT GATGTGAAGTATGCGCATAACCAGGACACAGGTATTCTTGGCTCTGTGAGCGAAGACAAACTGCAACTTTTTTCCGCGGAACTGTTACAAAAGAGGTAG
AA sequence Show only first row Show all	>Potri.010G228000.2 pacid=42800092 polypeptide=Potri.010G228000.2.p locus=Potri.010G228000 ID=Potri.010G228000.2.v4.1 annot-version=v4.1 MADNGHGNSYLSFGSTNRQENIGTMLASLRIEIRPQEQGGREVPFMFRSSRSSTTYGDGDQSTPMVIDSESVEGGERGSNERRIEERDGFSLTRKENEGT VEEAKRREDTVEEYDLDGLNCAICMEPWRSEGDHQVSCLPCGHLYGFSCISKWLQRPVPTTKCPQCNAKCKFKDIRKLYTTPVVVIDEGLQKKVESLEDE IGSLKTEKSDLLDIQDNLLEIQDNLLKLLRNLKEKPACTENTSFEQMGSKPHQFFNAKEAQGAQSGCSFGSYSSKQLLHCNFKLQHELAIEGGRLFAMDF SYQNLILTRRIAGMGGMHMLNKINLINPRENEDIQLPPSTKAVKDIQISPCGKLTLLASLGKKLSILSMESNNIVVTYNLRVPAWSCSWDLNSPHYVYAG LQNGMLLVFDMRGTLNPLQSMVGPVPGPIHTMHPLAQNPVLGSNSQKLLTASSLGPCVWNTDAGKRPFLVPGFENQGICTSLAYGPLSDDIVASYHPKSK KSNATVNSQCIDPDSSPFPGSATLCSQLLVKRIADSHYRNLGSTSAYLSNGQMARTAIINMQNCFPLFAYGDEATRGLRLKELPSFNVTQNLKPHHHPIL DVKYAHNQDTGILGSVSEDKLQLFSAELLQKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03450			Transducin/WD40 repeat-like su...		Potri.010G228000 [exp]	0	1
AT5G28530	FAR1_related	FRS10	FAR1-related sequence 10 (.1)		Potri.014G167000 [exp]	2.00	0.7793
AT3G26720			Glycosyl hydrolase family 38 p...		Potri.002G238200 [exp]	3.46	0.7282
AT5G45290			RING/U-box superfamily protein...		Potri.006G190500 [exp]	4.47	0.7455
AT1G77310			unknown protein		Potri.005G067800 [exp]	5.29	0.7742
AT2G02170			Remorin family protein (.1.2)		Potri.008G144300 [exp]	7.93	0.7075
AT5G25270			Ubiquitin-like superfamily pro...		Potri.018G115500 [exp]	8.48	0.7591
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.010G172100 [exp]	9.64	0.7739
AT5G53900			Serine/threonine-protein kinas...		Potri.011G116400 [exp]	14.00	0.7257
AT4G34660			SH3 domain-containing protein ...		Potri.003G105200 [exp]	15.87	0.6809
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Potri.013G048100 [exp]	17.88	0.7192

Compare expression of checked genes

Potri.010G228000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.