Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 742 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 709 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 704 / 0 EFR EF-TU receptor (.1) AT3G47110 697 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 685 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 446 / 3e-138 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G24130 410 / 6e-127 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 404 / 2e-124 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G44700 405 / 2e-122 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G07280 388 / 9e-117 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G228200 [exp] 1207 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 1170 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 1154 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 1145 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 1136 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 1122 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 1096 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 1093 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G152500 [exp] 1090 / 0 AT3G47570 753 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030845 [exp] 844 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 838 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 836 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 828 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 827 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 827 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 824 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 817 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 817 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 816 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.010G228300.1 pacid=42797494 polypeptide=Potri.010G228302.1.p locus=Potri.010G228300 ID=Potri.010G228300.1.v4.1 annot-version=v4.1 ATGGAGGTTACAGGCATGAGTCCATTCACAGTCTGGCCGCTCTTCTTTCTAATAATTCAACTCTCCTTTTCTTTCTCCTTAGCTCAAGGAAATGAGACAG ATATATTCTCCCTCCTAGCCTTAAAGCATCAGATTACTGATGACCCCTTAGGTAAACTGAGCTCATGGAATGAATCCACACACTTCTGTGAGTGGTCTGG TGTTACATGTGGAAAGAAGCATCAGAGAGTTGTACAGCTTGACCTACAGTCTTGCAAGCTCTCGGGCAGCTTATCTCCTCACGTCGGCAACATGAGTTTC CTCAGGACATTGAACTTGGAAAACAACAGCTTCGGCCAGAATATCCCTCAGGAACTGGGTAGTTTGTTTCGGCTACAGGCTTTGGTCCTCACAAACAATT CGTTCAGTGGTGAAATCCCTGCCAACATCTCGCGTTGCTCAAATCTCTTGAGCCTTGAATTAGAAGGCAACAATCTTACTGGCAAACTTCCTGCAGAATT TGGATCATTATCAAAGCTGAAGGCATTTTATTTCCCAAGGAACAATCTCTTTGGTGAGATTCCACCTGCTTATGGAAATCTTTCACACATCGAGGAAATT CCGGGAGGACAGAATAATTTGCAAGGAGACATTCCAAAGAGTATCGGGAAATTGAAAAGATTGAAGCACTTCTCTTTTGGCACAAATAACCTGAGCGGTA CAATCCCTACCTCCATATACAATCTTTCATCCCTTACTCATTTCTCTGTGCCAGCAAACCAACTTCATGGGAGTCTTCCTCGTGACTTAGGCCTAACTCT TCCAAACCTTGAAATCTTTAGAATTCACACCTGCCAATCCAGTGGACTGATTCCAGTAACAATCTCCAATGTTTCTAATCTTTCTCTTCTTGATCTTGGA CTCAACAGCTTTACTGGGCAAGTGCCTACTTTAGCAGGGCTTCATAATCTACGGTTGCTGGCACTTGATTTCAATGATCTCGGAAATGGTGAGAATAACG ATCTAAACTTTCTCTATCCCCTGGCAAACAACACCAGTTTGGAAATGATCGGTTTGAATTATAACTATTTAGGAGGTGCGCTGCCGGAAATAGTTAGCAA CTTTTCATCAAAGCTTAGATTCATGACATTCGGAAACAACCAAATAAGCGGAAGCATTCCAAATGAGATCGGAAATCTAATAAGCCTGCGGGGTTTCGGT TTTGAGTCGAACAAACTGACTGGCATCATACCAACTTCTATTGGTAAGTTACAAAATTTAGGTGCTCTGGCTCTTAGCGGAAATAAAATTGCTGGGAATA TACCATCTTCCCTTGGCAATAGTACCGCATTGGTCTTGCTTTATTTAGACAAAAATAATTTGCAAGGAAGCATCCCGTCAAGTCTAGGAAATTGCCGGGA TTTGTTGTCATTGGATCTCTCTCAAAACAATTTTAGCGGTCCCATACCACCAGAAGTAATTGGTATACCTTCCTTGTCAGTGAGTTTAGACCTATCTCAA AATCAGTTGATAGGCCCCCTTCCCTCCGAAGTTGGTATGTTGGTAAACCTAGGATATCTTGATGTTTCACATAATAGTTTATCAGGTGAGATTCCAGGAA GTCTTGGAAGCTGCGTTGTGTTGGAAAATTTGCTTTTGGAGGGGAACTTATTCAAAGGTTCTATTCCAAAGTCCATGAGTTCTTTGAGAGCACTTAAATA TCTTAATATCTCTTACAACAACTTGACAGGCCAGATTCCGAGGTTTTTGGCAGACTTCAGGTTCTTGCAACACTTGGATCTGTCATTTAATCACCTTGAA GGTGAGATGCCTACACAAGGAATTTTCGGGAATGCAAGTGCAGTCTCAGTTTTGGGAAACAATAAGCTTTGTGGAGGAATATCTCTGTTCAATTTATCCA GATGCATGTTGAAGGAGTCAAAAAAGCCGAAAACTTCTACCAAGCTGATGTTGTTAATTGCAATTCCGTGTGGTTTTCTAGGAGTATTTTGTGTGATCGC TTGTCTACTTGTCTGTTGCTTTCGGAAAACAGTAGATAAGTCTGCTTCTGAAGCTTCTTGGGATATCTCATTGCGGAGAATCACATATGGAGAACTCTTT CAAGCAACTGATAGGTTCTCCTCATCCAATATAATTGGTGCAGGCAGTTTTGGGTCTGTGTACAGAGGAATTCTTGCATCAGATGGAGCAGTTGTTGCGG TCAAAGTATTCAACTTGCCATGTAAAGGAGCTTCCAAAAGCTTTATGACAGAATGTGCAGCCTTGATAAACATCAAGCACCGGAACCTCGTCAAAGTCCT CGGCGTATGTGCTGGTGTTGATTTTGAAGGTAATGATTTTAAGGCTCTTGTTTATGAGTTTATGGTCAATGGGAGTCTAGAAGAGTGGTTGCATCCAGTT CATGTATCAAACGAGGCATGCGAGGCAAGAAATTTGAACCTTATTCAGAGGTTAAGCATTTCAATTGATGTGGCTGCTGCGCTCGACTATTTGCATCATG GTTGCCAAGTGCCTGTTGTCCATTGTGATCTGAAGCCTAGCAATGTTCTTCTTGATGGTGATATGATCTCTCATGTTGGTGATTTTGGACTAGCAAGGTT CAGTCCAGAAGCCTCCCATCAATCATCTTCAAACCAGAGTAGCTCTGTTGGTATAAAAGGAACCATTGGCTACGCAGCGCCAGAGTATGGTATGGAGCGC AAGGTGTCAACTTACGGGGATGTGTACGGCTATGGCATCCTATTATTGGAGATGTTCACGGGAAAGAGACCAACACATGGCATGTTTAACGACGAGCTGA ACCTTCACACTTACGCTGCAATGTCATTGCCTGACCGTGTAGTTGATGTTGTGGATTCCATACTTCTGAGAGAAGTTGAGGAAACAAGTTCTGATGCCCC TCGTAGGAAGCAAGATGTTAGAGCTCACAAGAATTTTCAATGTTTGACTTCAATAATCAACGTAGGACTGGCTTGTTCTGCAGACCTCCCGAAAGAGAGG ATGGCCATGAGCACTGTTGTGGCTGAATTGCATCGAATCAGGGACATTTTCCTAGGCGGTAGAAGGCATAAACACCACGAAATCGTTGTCTTACCAGAAG GTACAGTTGATACGTTATGCTAA
AA sequence Show only first row Show all	>Potri.010G228300.1 pacid=42797494 polypeptide=Potri.010G228302.1.p locus=Potri.010G228300 ID=Potri.010G228300.1.v4.1 annot-version=v4.1 MEVTGMSPFTVWPLFFLIIQLSFSFSLAQGNETDIFSLLALKHQITDDPLGKLSSWNESTHFCEWSGVTCGKKHQRVVQLDLQSCKLSGSLSPHVGNMSF LRTLNLENNSFGQNIPQELGSLFRLQALVLTNNSFSGEIPANISRCSNLLSLELEGNNLTGKLPAEFGSLSKLKAFYFPRNNLFGEIPPAYGNLSHIEEI PGGQNNLQGDIPKSIGKLKRLKHFSFGTNNLSGTIPTSIYNLSSLTHFSVPANQLHGSLPRDLGLTLPNLEIFRIHTCQSSGLIPVTISNVSNLSLLDLG LNSFTGQVPTLAGLHNLRLLALDFNDLGNGENNDLNFLYPLANNTSLEMIGLNYNYLGGALPEIVSNFSSKLRFMTFGNNQISGSIPNEIGNLISLRGFG FESNKLTGIIPTSIGKLQNLGALALSGNKIAGNIPSSLGNSTALVLLYLDKNNLQGSIPSSLGNCRDLLSLDLSQNNFSGPIPPEVIGIPSLSVSLDLSQ NQLIGPLPSEVGMLVNLGYLDVSHNSLSGEIPGSLGSCVVLENLLLEGNLFKGSIPKSMSSLRALKYLNISYNNLTGQIPRFLADFRFLQHLDLSFNHLE GEMPTQGIFGNASAVSVLGNNKLCGGISLFNLSRCMLKESKKPKTSTKLMLLIAIPCGFLGVFCVIACLLVCCFRKTVDKSASEASWDISLRRITYGELF QATDRFSSSNIIGAGSFGSVYRGILASDGAVVAVKVFNLPCKGASKSFMTECAALINIKHRNLVKVLGVCAGVDFEGNDFKALVYEFMVNGSLEEWLHPV HVSNEACEARNLNLIQRLSISIDVAAALDYLHHGCQVPVVHCDLKPSNVLLDGDMISHVGDFGLARFSPEASHQSSSNQSSSVGIKGTIGYAAPEYGMER KVSTYGDVYGYGILLLEMFTGKRPTHGMFNDELNLHTYAAMSLPDRVVDVVDSILLREVEETSSDAPRRKQDVRAHKNFQCLTSIINVGLACSADLPKER MAMSTVVAELHRIRDIFLGGRRHKHHEIVVLPEGTVDTLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.010G228300 [exp]	0	1
AT4G04630			Protein of unknown function, D...		Potri.004G014000 [exp]	2.44	0.9018
AT1G16770			unknown protein		Potri.014G003300 [exp]	3.87	0.9127
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.016G049900 [exp]	4.58	0.9225
AT1G64070		RLM1	RESISTANCE TO LEPTOSPHAERIA MA...		Potri.006G284000 [exp]	8.77	0.8967
AT4G30240			Syntaxin/t-SNARE family protei...		Potri.018G093400 [exp]	10.24	0.8593
AT4G31330			Protein of unknown function, D...		Potri.006G278000 [exp]	12.48	0.8545
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Potri.019G031700 [exp]	13.74	0.8534
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Potri.015G026700 [exp]	15.49	0.8316
AT1G20950			Phosphofructokinase family pro...		Potri.010G106950 [exp]	15.49	0.8935
AT5G48970			Mitochondrial substrate carrie...		Potri.010G024100 [exp]	16.73	0.8334

Compare expression of checked genes

Potri.010G228300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.