Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54940 501 / 6e-179 Papain family cysteine protease (.2) AT4G39090 393 / 3e-136 EMB3005, RD19A, RD19 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) AT2G21430 389 / 1e-134 Papain family cysteine protease (.1) AT4G16190 371 / 1e-127 Papain family cysteine protease (.1) AT4G35350 214 / 4e-66 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G20850 210 / 8e-65 XCP2 xylem cysteine peptidase 2 (.1) AT5G60360 204 / 1e-62 SAG2, AALP SENESCENCE ASSOCIATED GENE2, aleurain-like protease (.1.2.3) AT1G06260 201 / 3e-61 Cysteine proteinases superfamily protein (.1) AT5G43060 203 / 8e-61 Granulin repeat cysteine protease family protein (.1) AT3G19390 201 / 4e-60 Granulin repeat cysteine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G028700 [exp] 391 / 2e-135 AT4G39090 536 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.004G160300 [exp] 386 / 2e-133 AT4G39090 549 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.005G234000 [exp] 386 / 2e-133 AT4G39090 501 / 9e-179 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.009G121300 [exp] 385 / 4e-133 AT4G39090 571 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.004G207600 [exp] 213 / 5e-66 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.005G256000 [exp] 209 / 2e-64 AT1G20850 539 / 0.0 xylem cysteine peptidase 2 (.1) Potri.002G005700 [exp] 202 / 1e-61 AT1G20850 531 / 0.0 xylem cysteine peptidase 2 (.1) Potri.007G047600 [exp] 202 / 1e-61 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.005G141600 [exp] 197 / 1e-59 AT4G36880 437 / 1e-153 cysteine proteinase1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038684 [exp] 552 / 0 AT3G54940 499 / 1e-177 Papain family cysteine protease (.2) Lus10037951 [exp] 508 / 3e-179 AT3G54940 451 / 6e-157 Papain family cysteine protease (.2) Lus10024303 [exp] 390 / 5e-135 AT4G39090 520 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10028797 [exp] 380 / 9e-131 AT4G39090 559 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10017487 [exp] 371 / 6e-128 AT4G39090 550 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10002103 [exp] 343 / 7e-118 AT4G39090 431 / 5e-153 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10017489 [exp] 211 / 4e-67 AT4G39090 314 / 5e-108 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10030722 [exp] 211 / 6e-65 AT4G35350 511 / 0.0 xylem cysteine peptidase 1 (.1.2) Lus10013204 [exp] 210 / 1e-64 AT1G20850 509 / 0.0 xylem cysteine peptidase 2 (.1) Lus10033428 [exp] 202 / 2e-61 AT3G45310 565 / 0.0 Cysteine proteinases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00112 [poplar] [flax] Peptidase_C1 Papain family cysteine protease CL0125 [poplar] [flax] PF08246 [poplar] [flax] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Potri.010G228400.1 pacid=42797867 polypeptide=Potri.010G228400.1.p locus=Potri.010G228400 ID=Potri.010G228400.1.v4.1 annot-version=v4.1 ATGATCCACAAAACCCCAGCTCTAACATGCACTGCAATCCTTACAGTACTCCTAGCCTTTTCATCAGTATCAGTTGCTGTAACTGATCTCTATGACAACC CACAGGACCCAACAATCCTCCAAGTCACAGACAATCCTACCCTTGACAACAGGAAGTTCATGAAAAATGGTCTTAACCTTCTGGGAACTGAAGAGAAGTT CAAGATGTTTATAAAAGAGCACAACAAAGAATATGCAACTAGAGAAGAGTACGTGCACCGCTTTGGGATCTTCGGCAAGAACTTGATCAGAGCTGTTGAG CACCAGGCACTGGACCCCACTGCAATTCATGGGGTCACTCCGTTTATGGACTTGACCGAGGAGGAATTCGAGAGAATGTATGCTGGTGTTTTGGGTGGTG GTACTGTACCAGTGGAGAAAGGTTCTGTTTCTTTCATGGATGCAAGTGGTTTGCCTGATAGTTTTGATTGGAGAGAGAAAGGAGCTGTCACTGATGTCAA GATTCAGGGTTCTTGTGGATCATGCTGGGCTTTTAGTACCACTGGATCTGTTGAAGGAGCAAATTTTATTGCAACAGGGAAGCTTCTCAATCTCAGTGAA CAACAGCTTGTTGATTGTGACAGGGTGTGTGACAAGACAGACAAGGCTTCATGCGACGATGGTTGCGGTGGAGGACTCATGACCAATGCCTACAGGTATT TGATTGAAGCAGGGGGGTTACAAGAGGAGAGTTCATACCCTTATACAGGTAAAAGTGGCGAATGCAAGTTTGATCCTGAGAAGATAGCTGTAAAAGTTGC TAATTTCACCAGTATCGCTGTTGACGAGAACCAAATTGCGGCAAATTTAGTTCACCACGGACCTCTTGCAATTGGATTGAATGCAATATTCATGCAAACT TATATCGGGGGAGTCTCGTGCCCACTTATTTGCGGCAAGAAATGGCTTAACCATGGTGTTCTGCTTGTCGGGTATGGTGCAAGAGGGTACTCCATTCTTA GATTTGGCTACAAGCCGTATTGGATCATCAAGAACTCATGGGGAAACCATTGGGGAGAGAAGGGATATTACCGGCTTTGCAGGGGACATGGTATGTGTGG CATGAACAAGATGGTCTCTGCAGTGGTAACCAAGGTTGCCTAA
AA sequence Show only first row Show all	>Potri.010G228400.1 pacid=42797867 polypeptide=Potri.010G228400.1.p locus=Potri.010G228400 ID=Potri.010G228400.1.v4.1 annot-version=v4.1 MIHKTPALTCTAILTVLLAFSSVSVAVTDLYDNPQDPTILQVTDNPTLDNRKFMKNGLNLLGTEEKFKMFIKEHNKEYATREEYVHRFGIFGKNLIRAVE HQALDPTAIHGVTPFMDLTEEEFERMYAGVLGGGTVPVEKGSVSFMDASGLPDSFDWREKGAVTDVKIQGSCGSCWAFSTTGSVEGANFIATGKLLNLSE QQLVDCDRVCDKTDKASCDDGCGGGLMTNAYRYLIEAGGLQEESSYPYTGKSGECKFDPEKIAVKVANFTSIAVDENQIAANLVHHGPLAIGLNAIFMQT YIGGVSCPLICGKKWLNHGVLLVGYGARGYSILRFGYKPYWIIKNSWGNHWGEKGYYRLCRGHGMCGMNKMVSAVVTKVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54940			Papain family cysteine proteas...		Potri.010G228400 [exp]	0	1
AT4G17565			F-box family protein with a do...		Potri.004G134900 [exp]	6.40	0.9563
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Potri.017G106700 [exp]	7.74	0.8807
AT2G05920			Subtilase family protein (.1)		Potri.001G113533 [exp]	18.97	0.9556
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G177300 [exp]	20.12	0.9556
AT5G14990			unknown protein		Potri.010G222200 [exp]	21.23	0.9256
AT4G30880			Bifunctional inhibitor/lipid-t...		Potri.009G048900 [exp]	22.24	0.9556
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Potri.010G119500 [exp]	23.62	0.8758
					Potri.014G045150 [exp]	24.18	0.9556
					Potri.019G036825 [exp]	25.98	0.9556
AT3G58610			ketol-acid reductoisomerase (....		Potri.019G089366 [exp]	26.83	0.9556

Compare expression of checked genes

Potri.010G228400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.