Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36840 525 / 0 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1) AT2G39570 436 / 7e-152 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT5G65890 42 / 0.0006 ACR1 ACT domain repeat 1 (.1.2) AT1G12420 42 / 0.0008 ACR8 ACT domain repeat 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G033200 [exp] 745 / 0 AT2G36840 513 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.011G154600 [exp] 570 / 0 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.001G442600 [exp] 568 / 0 AT2G36840 546 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.010G207700 [exp] 446 / 1e-155 AT2G39570 560 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.008G052900 [exp] 440 / 2e-153 AT2G39570 574 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.001G237100 [exp] 440 / 2e-153 AT2G39570 533 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.003G167800 [exp] 50 / 3e-06 AT1G69040 486 / 1e-170 ACT domain repeat 4 (.1.2) Potri.001G060100 [exp] 46 / 3e-05 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.005G185600 [exp] 46 / 4e-05 AT1G76990 709 / 0.0 ACT domain repeat 3 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017470 [exp] 679 / 0 AT2G36840 507 / 1e-179 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10023921 [exp] 546 / 0 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10014418 [exp] 543 / 0 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10004948 [exp] 439 / 6e-153 AT2G39570 479 / 7e-169 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10005157 [exp] 410 / 2e-141 AT2G39570 587 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10001702 [exp] 404 / 3e-139 AT2G39570 582 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10028812 [exp] 394 / 7e-137 AT2G36840 288 / 1e-95 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10005447 [exp] 332 / 2e-111 AT2G36840 385 / 2e-132 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10006662 [exp] 44 / 0.0002 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1) Lus10019191 [exp] 43 / 0.0003 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G228500.1 pacid=42797016 polypeptide=Potri.010G228500.1.p locus=Potri.010G228500 ID=Potri.010G228500.1.v4.1 annot-version=v4.1 ATGGGGATATTGCAAGAGGATGTTGTTGTGATAAGTCAAGCGGAGAAGCCTGGAGAGCCGGCTGTGATTACTGTGAATTGTCCTGATAAAACTGGACTTG GTTGTGATTTGTGCAGGGTTATCTTGCTTTTTGGATTAAGCATTTGTAGAGAAGATGCACAAACGGACGGGAAGTGGTGCTATTTAGTGTTTTGGGTGGT GGGGAAGCCTAACACAAGGTGGGATTTGTTGAAGAAGAGGCTATTGGAGGTGTGCCCGTCATATTTTTCAACCTCAGAATTTGACTACTACAAGCCTGAG AACCAACAGCCAAAGCCGCCTGATGTATTTCTGTTGAAGTTCTGGTGCGCTTATGACCGTGAAGGCCTTTTACATGATGTAACTGAGTTTCTATGGGAGC TGGAGCTAACAATAAAAAGAGTGAAGGTGTCCACTGCTCCAGATGGGAGAGTGCTGGACCTCTTTTTCATCACAGATAATAGGGAACTTCTTCACACAAA AATGAGACAGGAGGAAACAATTCATTATCTGAAGAATGTGTTAGGGAAGGCCTTGATTAGTTGTGAGATCGAATTAGCTGGGGCAGAAGTTACTGCATGT TCTCAATCATTTCTTCCTCCTGCAATCACAGAAGACATGTTTAATTTGGAGCTTCCCAATAAACACCGGAGTGGCTTTCTTGCTCCCAATCCTGTCTCTG TTACAGTGGACAACACCTTCAGCCCTTCGCACACTCTCATTCAAATTCTCTGCAAGGATCACAAGGGTCTCAGTTACGATATAATGAGAACACTAAAGGA TTATCATATCCAGATTTCTTATGGGCGTTTCTTTGCGAACCGAAAAGGAAACTGTGAGGTGGACTTGTTCTTAATGCAAGCAGATGGCAAGAAGATAGTT GACCCCAACAAACAGAATGCCTTGTGTTCTCGTTTGAGAATGGAGCTTCTGCGTCCTGTAAGACTTGCTGTGGTTAGTCGAGGTCCTGATACTGAGCTGC TTGTTGCAAACCCTGTTGAGCTGTCTGGCAGAGGCCGGCCTCTTGTCTTCCACGACATTACTCTGGCTCTCAAGACTCTAAACACCCGCATCTTCTCGGT AGAGATAGGGAGACACATGATTCACGATCGGGAATGGGAAGTCTACAGAATACTACTCGATGAAGGGGATGGTTTACCTGTGTCCCGGAACAAGATTGAG GAGGGTGTTAGAAAAGTATTGATGGGCTGGGAATAG
AA sequence Show only first row Show all	>Potri.010G228500.1 pacid=42797016 polypeptide=Potri.010G228500.1.p locus=Potri.010G228500 ID=Potri.010G228500.1.v4.1 annot-version=v4.1 MGILQEDVVVISQAEKPGEPAVITVNCPDKTGLGCDLCRVILLFGLSICREDAQTDGKWCYLVFWVVGKPNTRWDLLKKRLLEVCPSYFSTSEFDYYKPE NQQPKPPDVFLLKFWCAYDREGLLHDVTEFLWELELTIKRVKVSTAPDGRVLDLFFITDNRELLHTKMRQEETIHYLKNVLGKALISCEIELAGAEVTAC SQSFLPPAITEDMFNLELPNKHRSGFLAPNPVSVTVDNTFSPSHTLIQILCKDHKGLSYDIMRTLKDYHIQISYGRFFANRKGNCEVDLFLMQADGKKIV DPNKQNALCSRLRMELLRPVRLAVVSRGPDTELLVANPVELSGRGRPLVFHDITLALKTLNTRIFSVEIGRHMIHDREWEVYRILLDEGDGLPVSRNKIE EGVRKVLMGWE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.010G228500 [exp]	0	1
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Potri.009G060600 [exp]	1.41	0.7573
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.007G016900 [exp]	27.20	0.6894
AT5G43210			Excinuclease ABC, C subunit, N...		Potri.001G259900 [exp]	49.56	0.6205
AT5G41950			Tetratricopeptide repeat (TPR)...		Potri.011G050600 [exp]	51.27	0.6995
					Potri.001G255700 [exp]	70.21	0.6790
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.013G130800 [exp]	77.45	0.6444
AT1G15410			aspartate-glutamate racemase f...		Potri.003G061800 [exp]	83.96	0.6514
AT3G19480			D-3-phosphoglycerate dehydroge...		Potri.014G022800 [exp]	87.74	0.6826
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Potri.001G266000 [exp]	88.85	0.6689
AT1G76410		ATL8	RING/U-box superfamily protein...		Potri.002G006400 [exp]	93.67	0.6568

Compare expression of checked genes

Potri.010G228500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.