Plant FIBer expression Database

Potri.010G228550 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G228550.1 pacid=42797860 polypeptide=Potri.010G228550.1.p locus=Potri.010G228550 ID=Potri.010G228550.1.v4.1 annot-version=v4.1
ATGGAGAGGGGGAGATTTGTAATGGAGGAAGATTCGAAGGGATCTCCTCTTGGATTGGAGAAGAGAGTGGAGTCCACAAACAAAAGTAGAAAGACACTAC
AGGACAAACAACTAACGACCGCTCGTGTAAGAGAAATGAGGGGACACGTGGTGGCTGCGGACCACATGTTCTGGCAGAGAGGAAGTTGGTTTCGTGTTGT
GTTTGGAGACTGGGCTCCGTTGAATGGAACTCTCAAGCAATCTTCAAAGCGGACAAGGGAAGACATGAGGGAAGGACAAGAGGAATTTTCCGTCTGCTTG
AAGCATAATTCCTTTTCAGCCAATGAGATATTTTCTAATGCAAAAGGATTCTCAAGTCTGGTGCCTGGCTGGTTGGAAAATTCTTGA
AA sequence
>Potri.010G228550.1 pacid=42797860 polypeptide=Potri.010G228550.1.p locus=Potri.010G228550 ID=Potri.010G228550.1.v4.1 annot-version=v4.1
MERGRFVMEEDSKGSPLGLEKRVESTNKSRKTLQDKQLTTARVREMRGHVVAADHMFWQRGSWFRVVFGDWAPLNGTLKQSSKRTREDMREGQEEFSVCL
KHNSFSANEIFSNAKGFSSLVPGWLENS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G228550
[exp]
0 1
Potri.013G042750
[exp]
6.48 0.6928
AT3G49350 Ypt/Rab-GAP domain of gyp1p su... Potri.012G024500
[exp]
50.29 0.6342
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.019G014388
[exp]
61.48 0.6056
AT1G73165 CLE1 CLAVATA3/ESR-RELATED 1 (.1) Potri.011G063700
[exp]
72.15 0.6614
AT2G24100 ASG1 ALTERED SEED GERMINATION 1, un... Potri.013G009000
[exp]
72.15 0.6397
AT1G06225 CLE3 CLAVATA3/ESR-RELATED 3 (.1) Potri.019G091100
[exp]
78.07 0.6550 CLE3.1
AT1G75950 UIP1, SKP1A, AT... UFO INTERACTING PROTEIN 1, ARA... Potri.001G132300
[exp]
80.27 0.5883
AT1G17030 unknown protein Potri.001G381600
[exp]
132.47 0.6026
AT4G33880 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (... Potri.001G294300
[exp]
136.43 0.6150
AT4G35660 Arabidopsis protein of unknown... Potri.007G059700
[exp]
143.13 0.5857

Potri.010G228550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.