Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10420 819 / 0 SPD1 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G73170 530 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G33290 355 / 2e-116 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G375900 [exp] 556 / 0 AT1G73170 717 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017471 [exp] 918 / 0 AT3G10420 835 / 0.0 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10028811 [exp] 906 / 0 AT3G10420 830 / 0.0 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015985 [exp] 521 / 9e-177 AT1G73170 717 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10012291 [exp] 519 / 3e-176 AT1G73170 712 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13238 [poplar] [flax] AAA_18 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.010G228600.1 pacid=42799994 polypeptide=Potri.010G228600.1.p locus=Potri.010G228600 ID=Potri.010G228600.1.v4.1 annot-version=v4.1 ATGAGATCAATGAATTCGCGTTTTTTACTCATTGATCTACAAAGCTCATGTTATTCAGCTCGGCAAATCCCACTATCAACAACACTCACTTACCTCTCAA CAATCACGTCATCATTTCGTCAAACACGTGGTGTGCAGCGTCGAATTGCCTCCTCAAAGTCACCCACGCCGTCGGTTGTACGGGCTCCGGAGATACGGAG ACCGGGGGATCGGTACAGGACAGGAAATGGGTCGGTGATAGATTTGGAGAATTCCGCTTCTACTTCGAGTTTAGTGAATAGTAATAGTGAGTTGGATTTG TTTCTTGAATTGTTGCCGTTGAGAATGAAGGGTGAGTTATCTGGGCACAGAGAGATTGGCGAGTTGATTGAAGTGGTACTGGATTTGGGAAGGAAGCCTA TTGCCAGATTTCCATCTGGGGATTTTGTCATTTGTGAGCAGCCAGTGAGGCACGAGGATTTAAAGCATGCTATATCAAAGGTTGGTGATTTTTCTGATGA CAACCGTTCGGGTATTGATAGTTCTTTGCATCGTATAAGTGCCATTCGAAACCGTAAAATGCAAATTATTGGCCTTACTTGTCGGGTTGGTCGTGCTGTA TCTGGAAGTGCTGAAATTATCCGTGACTTGGTTGAGGGGGGAAGTTCTATCTTGGTCATAGGTCGTCCAGGAGTGGGTAAAACAACCTTAATCAGAGAAA TAGCCAGAATGTTGGCAGATGACCAGCGGAAACGTGTTGTAATTGTAGATACATCAAATGAAATTGGGGGTGATGGGGATGTTCCTCATGCAGGAATAGG TCGTGCAAGGAGGATGCAAGTTCCAAATGTTAATATGCAGCATAATATTATGATTGAAGCAGTTGAAAATCATATGCCCGAGACCATCATAATTGATGAG ATTGGAACAGAGCTTGAAGCCTTAGCTGCCAGCACTATTGCTCAACGTGGAGTTCAGCTGGTTGGAACAGCCCATGGAATGACCATAGACAACATAATAA AGAATCCTTCTTTGCAGATTCTTGTTGGAGGCATAGAGAGTGTAACTCTTGGGGATGAGGAAGCAAGGAAAAGGAAAGTGCAGAAGACAATTCTTGAGAG GAAAGGGCCTCCAACATTTACATGTGCTGTTGAGATGATAACTAGAACAGAGTGTCGTGTTCATCACAGATTAGATGCAACGGTAGATGCTATATTGGCT GGAAAATCTCCTCTGTTTGAAATCCGACACGTAGATACTGAGGGTGATGATTCTCTTAAGTTAATTCCAATACTTCAAGAGAACCTTATAGAAGAAAGTG ATGATTCTCTCAAGTCCATTTCAATACTTCAAGAGAACTACGTAGAAGAAACTGAGGTGATAATTAGTGATAAAGAAAGATGTGATGAAGTAGAGTCTGA TGAGGAAGATGAAGATTATTGTCCAAAACAATCCAAAACATGGAAATCCAGTGGAACTGAGCGCAAGAGGAATTCACCAGTATGCGTATACACTTGCAAG ATTGTTGATTCTGATCTACTACAAGTGGCAAAAGTAATGGGGATAGAGAATGAGATAGATGTGACTGATGACATTGGAGCAGCAGATGCAATACTAGCAT CCAGTTCAGAAATGAAGCAGAACCCATGGATCCGTGGTGTTGCTAAATACCACCATTTACCTGTATTTGTTATCAAGTCAAATACCATGGCACAAATGGT GAAGGCACTTCGTATGATTCTTGGAATGGAATCGCTTGGCTCTTCATTACAACAGCCACTCAAAAGTTCTTTTGACATAGAAATTGAAGATGATGCACCA AAAAGGAAACCTACCTTGGAAGAGATTGATGCCTTGGAGGAGGTTCGCCTGGCAATTGAGTATATTGTCATCCCTGGCGGAGAGCCAGTGGAGCTTCTTC CTAGACGCTCTGAAATAATTGCTCGGCAGCTAGAGCTCGTGGAAAGCTATCAGTTGACAGCAGAAAATTCAGGCACTGAAGTTAACCCTAGGTTGCAGAT TCTTCCCATGAGGACAAACAAGAAAACAACATCTAGACCTCCAAAATCTAGTTCAACTTCACAGGCAGTGACAAGCTTGGAATCACTAACTGGAAGCGGT GGCACTAGTGTGACCAGGCTGCCCCTTCTTCCTGAATAA
AA sequence Show only first row Show all	>Potri.010G228600.1 pacid=42799994 polypeptide=Potri.010G228600.1.p locus=Potri.010G228600 ID=Potri.010G228600.1.v4.1 annot-version=v4.1 MRSMNSRFLLIDLQSSCYSARQIPLSTTLTYLSTITSSFRQTRGVQRRIASSKSPTPSVVRAPEIRRPGDRYRTGNGSVIDLENSASTSSLVNSNSELDL FLELLPLRMKGELSGHREIGELIEVVLDLGRKPIARFPSGDFVICEQPVRHEDLKHAISKVGDFSDDNRSGIDSSLHRISAIRNRKMQIIGLTCRVGRAV SGSAEIIRDLVEGGSSILVIGRPGVGKTTLIREIARMLADDQRKRVVIVDTSNEIGGDGDVPHAGIGRARRMQVPNVNMQHNIMIEAVENHMPETIIIDE IGTELEALAASTIAQRGVQLVGTAHGMTIDNIIKNPSLQILVGGIESVTLGDEEARKRKVQKTILERKGPPTFTCAVEMITRTECRVHHRLDATVDAILA GKSPLFEIRHVDTEGDDSLKLIPILQENLIEESDDSLKSISILQENYVEETEVIISDKERCDEVESDEEDEDYCPKQSKTWKSSGTERKRNSPVCVYTCK IVDSDLLQVAKVMGIENEIDVTDDIGAADAILASSSEMKQNPWIRGVAKYHHLPVFVIKSNTMAQMVKALRMILGMESLGSSLQQPLKSSFDIEIEDDAP KRKPTLEEIDALEEVRLAIEYIVIPGGEPVELLPRRSEIIARQLELVESYQLTAENSGTEVNPRLQILPMRTNKKTTSRPPKSSSTSQAVTSLESLTGSG GTSVTRLPLLPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Potri.010G228600 [exp]	0	1
AT5G09300			Thiamin diphosphate-binding fo...		Potri.005G185400 [exp]	1.00	0.9620
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Potri.002G057400 [exp]	2.00	0.9443	PDS1.2
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Potri.013G148400 [exp]	2.44	0.9460
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Potri.001G148900 [exp]	2.82	0.9492	Pt-BMY.1
AT3G47960			Major facilitator superfamily ...		Potri.017G076800 [exp]	6.00	0.9382
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.003G119600 [exp]	6.32	0.9396
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.008G010600 [exp]	7.21	0.9255
AT5G26940		DPD1	defective in pollen organelle ...		Potri.005G020600 [exp]	7.74	0.9260
AT4G03230			S-locus lectin protein kinase ...		Potri.001G441040 [exp]	7.93	0.9305
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.001G168200 [exp]	9.59	0.9036	Pt-RSH2.3

Compare expression of checked genes

Potri.010G228600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.