Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04290 605 / 0 SPT5L, KTF1 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) AT4G08350 201 / 3e-55 GTA2, GTA02 global transcription factor group A2 (.1) AT2G34210 186 / 4e-50 Transcription elongation factor Spt5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032800 [exp] 949 / 0 AT5G04290 635 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) Potri.004G162500 [exp] 211 / 2e-58 AT4G08350 1394 / 0.0 global transcription factor group A2 (.1) Potri.009G124200 [exp] 206 / 9e-57 AT4G08350 1372 / 0.0 global transcription factor group A2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037946 [exp] 679 / 0 AT5G04290 731 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) Lus10038680 [exp] 677 / 0 AT5G04290 727 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) Lus10028630 [exp] 200 / 1e-54 AT4G08350 1357 / 0.0 global transcription factor group A2 (.1) Lus10018928 [exp] 199 / 3e-54 AT4G08350 1358 / 0.0 global transcription factor group A2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0439 [poplar] [flax] NusG-like PF03439 [poplar] [flax] Spt5-NGN Early transcription elongation factor of RNA pol II, NGN section
Representative CDS sequence Show only first row Show all	>Potri.010G228766.2 pacid=42797732 polypeptide=Potri.010G228766.2.p locus=Potri.010G228766 ID=Potri.010G228766.2.v4.1 annot-version=v4.1 ATGGATGAGCGAGAATTTGATAAGATGATGGAAGAGCGTTACAAGAACAATCCTAGATTTCGCTATGCCGAAGATGCTGATGAGGCTAAAAGATCCATGG AAAGAAATTTTCTCGAGCCTTCTGCAAAGGACCCAACTGTCTGGAAAGTCAAATGCATGGTTGGACGCGAGAGGCATTCAGCTTTTTGCCTCATGCAGAA GTTTGTTGACTTGAAATCTCTGGGTACCAAACTTCAGATAATATCTGCATTTGCCATTGACCATGTAAAGGGTTTTCTTTATATTGAAGCTGACAAGCAA ATTGATATTATTGAGGCATGTAAAGGGCTTTGCAGCATATATTCTAGCAGAGTGGCACCATTTCCTAAAAATGAAGTGTCTCATCTGATCTCCATCCGGA GAGGTTGTAATCAAGTTACCGAGGGCACATGGGCTCGTGTAAAGAATGGGAACTATAAGGGTGACCTGGCGCAGATTGTGGCTGTAAATGATGTGCGGAA AAAAGCAACAGTGAAGCTGATTCCAAGAATTGATTTTCAAGCGTTGGCACAAAAATTTGGAGGTGGACTTGCAAAGAAGAAAGCTGCCATACCAGCTCCA AGATTGATCAGCTCAAGTGAACTTGAGGAGTTCCGGCCTCTTATTCAATATAGACGTGACCGTGATACTGGCAAGATGTTTGAGGTTCTTGATGGCTTGA TGCTCAAGGATGGATATTTATATAAAAGAGTATCTATAGATTCTTTAAGCTGCATGGGTGTTATACCTTCAGAAGAGGAGTTGTTGAAGTTCAAGCCTTC TGAGAATAATGAATCAGAGAATTTGGAATGGCTTGCGCAGATTTATGTTGGACAGAAGAAAAAACAGGTAATTGGAAATGAGAAAGGTGGTGATAAAGGA GAAAGCTCGTTATCATCTGGGCAGAAATTTGAACTGTACAATCTTGTGTGTTTTGGCCGCAAAGATTTTGGTCTTGTTGTTGGTATGGAGAAAGATGATT CTTACAAGATTCTAAAACATGGACTGGAAAAACCTGATGTGGTGACTGTTGCATTACGTGATCTAAAGAATGGGCTCACTGATATGAAGTTTACTGCTTT AGATCATCACAAGAAAACCATATCAGTTAATGATTCTGTCAAGGTTTTGGAAGGTCCATTGAAGGATAGGCAAGGAATTGTTAAGCAAATCTACCGAGGC ATCATATTTATATATGATCAGAATGAAACAGAAGATGGTGGTTATTTCTGTTTGAAAGCTCAAATGTGTGAGAAAATCAAGCTTTCTTTTGATGCATGCT GTGGAAAGGATGGAGAATCAGGCTCTTTAGATTTTGAAGATTTCCCATCATCTCCCAAATCCCCCTTATCGCCTAAAAGACCATGGCAAGCGAGAGAAAA TAACCGTAACTTCAACCAAGGGGACAAGGATGGATTGTTCTTCATTGGTCAAACCTTGAGAATTCGAATAGGACCTTTGAAGGGGTATCTATGTCAGGTC TTGGCCATACGCTATTCTGATGTTACTGTGAAGCTTGGTTCTCAGCAGAAAGTTCTTACAGTTAAAAGTGAGCATCTTTCTGAGGTTCGTGCAAAGAGCT CTGCCGTGTCTGTAAGTGATGAACCTGGATCCAGCTCTTTCAAACCATTTGATCTAAGCGGAACTGAAGGTGGTTCTGGAGGTTGGACAGGTGGTGCTGG GGCATCGACAGGGGGGTGA
AA sequence Show only first row Show all	>Potri.010G228766.2 pacid=42797732 polypeptide=Potri.010G228766.2.p locus=Potri.010G228766 ID=Potri.010G228766.2.v4.1 annot-version=v4.1 MDEREFDKMMEERYKNNPRFRYAEDADEAKRSMERNFLEPSAKDPTVWKVKCMVGRERHSAFCLMQKFVDLKSLGTKLQIISAFAIDHVKGFLYIEADKQ IDIIEACKGLCSIYSSRVAPFPKNEVSHLISIRRGCNQVTEGTWARVKNGNYKGDLAQIVAVNDVRKKATVKLIPRIDFQALAQKFGGGLAKKKAAIPAP RLISSSELEEFRPLIQYRRDRDTGKMFEVLDGLMLKDGYLYKRVSIDSLSCMGVIPSEEELLKFKPSENNESENLEWLAQIYVGQKKKQVIGNEKGGDKG ESSLSSGQKFELYNLVCFGRKDFGLVVGMEKDDSYKILKHGLEKPDVVTVALRDLKNGLTDMKFTALDHHKKTISVNDSVKVLEGPLKDRQGIVKQIYRG IIFIYDQNETEDGGYFCLKAQMCEKIKLSFDACCGKDGESGSLDFEDFPSSPKSPLSPKRPWQARENNRNFNQGDKDGLFFIGQTLRIRIGPLKGYLCQV LAIRYSDVTVKLGSQQKVLTVKSEHLSEVRAKSSAVSVSDEPGSSSFKPFDLSGTEGGSGGWTGGAGASTGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Potri.010G228766 [exp]	0	1
					Potri.010G228883 [exp]	1.41	0.9649
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Potri.004G090666 [exp]	4.89	0.9015
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Potri.001G341900 [exp]	5.29	0.9079
AT2G18220			Noc2p family (.1)		Potri.003G213601 [exp]	7.34	0.9102
AT3G47790		ABCA8, ATATH7	ATP-binding cassette A8, ABC2 ...		Potri.013G123401 [exp]	7.74	0.8945
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.007G057900 [exp]	11.00	0.8960
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.013G129100 [exp]	12.64	0.8844
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.016G063300 [exp]	15.71	0.8800
AT5G43740			Disease resistance protein (CC...		Potri.001G432200 [exp]	16.43	0.8652
AT1G27700			Syntaxin/t-SNARE family protei...		Potri.004G090200 [exp]	17.14	0.8785

Compare expression of checked genes

Potri.010G228766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.