Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032800 [exp] 458 / 3e-147 AT5G04290 635 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037946 [exp] 48 / 1e-05 AT5G04290 731 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) Lus10038680 [exp] 44 / 0.0003 AT5G04290 727 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G228883.1 pacid=42797692 polypeptide=Potri.010G228883.1.p locus=Potri.010G228883 ID=Potri.010G228883.1.v4.1 annot-version=v4.1 ATGGATCAACCCAAAACCAGTCCTATAAATCCATCAAGTTCTGCAGATAATGAACTAAGCAAAGATGGTGCTTGGGTAAGTCAAGCGACCGGAAATCAGA CTTCATCTTGGGGTGCAGTTGCAGGTGATTCTTGGAACAAAGCTGCTTCTAACTTTGGTTCTACCAGTGGTGCATCTGTCGGATGGGGTAAAGCAACTTT ACCCAATGAAGATCTGGCAGGCTCTTCAAGAGGTACTGGAGACAACTGGGGTCGAGGAAACCTCAGAGCTGAAAATTCTTTGATCGATTCTGCAGTAGCT TGGGACAAAGGAAAGACTGTTAGTGGAAACCAAACCAGCAGTTGGGGAGATGCAGCTACAGGGAAGAATCAAGTGGATTCTTGGGGAAAATGTAATGATG CAATTGGAGCAGGATCCTGGGAGAAGAAAAAAAGGTCTGGAACTGGAGAAGACTGCTGGAGTAACAAGAGTACTGGATGGAATCAACAGAAATCACAAGA TGGAGGAGACACTTGGGGTGAAGCTGCGGAAAACCAAGAGAAGGGCACTGCTCAAAATGATTCTTGGGGTGAAGCTGGGGAGAAGTGGGAAAGCAAAAAT AGCTCAGAAAAGCCAACTGAGGCTTGGGGTAAGGCAGGCGGGGGCAGCACTCAAACAGAAACTGAAGATGTTAATAAAGGAAGTGGCTGGATGAAAGCTG AAGTTGATAGTGCAACTCAAACTGCAAATTGGAGTCCTGGGAAAAAATTTAGTGAAGATGCTTCTGGGTGGAATAAAGATGGATCTAGTAACCAGAATCA AATTGATAGTTGGAATAAACCAAAGCCTTCTGGTGCTGATAGGGGATCTTGGAACAAACAGGGGGAATCCTCTTGGGGTAAACAAGAGGGGGGGTCTTCT TGGAATATACCAGACAGAGATCAAGAGTTTGGTGGTTGGAACAAAGAATCAGATGGGGGTCGTGGGTCAGGTGGGAGGAGGGGAAGAGGAGGTGGTCATG GTGGTAGAGATCACTTTGGCCGAGGAAGATCCTTTGGTGATGGTCAGTCTTCAGGTTGGAAAGCTGGAGAAGAAAACTCCACTGCCTATGATCAAGGAGG TGGCTGGGGTAAATCCAAGGGGTTCAAGGAAAGTAGAGATGATGGGTGGAAGCCTATTTCTTCTGGGGGTGATAGTGGATCAGGTTGGAACAAGAACTGG GGAGCAGATAAAGAGATTAGTTGA
AA sequence Show only first row Show all	>Potri.010G228883.1 pacid=42797692 polypeptide=Potri.010G228883.1.p locus=Potri.010G228883 ID=Potri.010G228883.1.v4.1 annot-version=v4.1 MDQPKTSPINPSSSADNELSKDGAWVSQATGNQTSSWGAVAGDSWNKAASNFGSTSGASVGWGKATLPNEDLAGSSRGTGDNWGRGNLRAENSLIDSAVA WDKGKTVSGNQTSSWGDAATGKNQVDSWGKCNDAIGAGSWEKKKRSGTGEDCWSNKSTGWNQQKSQDGGDTWGEAAENQEKGTAQNDSWGEAGEKWESKN SSEKPTEAWGKAGGGSTQTETEDVNKGSGWMKAEVDSATQTANWSPGKKFSEDASGWNKDGSSNQNQIDSWNKPKPSGADRGSWNKQGESSWGKQEGGSS WNIPDRDQEFGGWNKESDGGRGSGGRRGRGGGHGGRDHFGRGRSFGDGQSSGWKAGEENSTAYDQGGGWGKSKGFKESRDDGWKPISSGGDSGSGWNKNW GADKEIS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.010G228883 [exp]	0	1
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Potri.010G228766 [exp]	1.41	0.9649
AT2G18220			Noc2p family (.1)		Potri.003G213601 [exp]	2.82	0.9392
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Potri.004G090666 [exp]	4.69	0.9113
					Potri.002G115501 [exp]	5.83	0.8962
					Potri.018G077100 [exp]	6.00	0.9096
AT1G17070			GC-rich sequence DNA-binding f...		Potri.019G043200 [exp]	7.07	0.9136
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Potri.005G180800 [exp]	10.19	0.9032	CHB904,CHB4.1
					Potri.005G135601 [exp]	11.31	0.8981
AT2G18220			Noc2p family (.1)		Potri.003G213450 [exp]	12.00	0.8960
AT3G47790		ABCA8, ATATH7	ATP-binding cassette A8, ABC2 ...		Potri.013G123401 [exp]	12.12	0.8853

Compare expression of checked genes

Potri.010G228883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.