Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04310 583 / 0 Pectin lyase-like superfamily protein (.1) AT3G54920 566 / 0 PMR6 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) AT3G53190 554 / 0 Pectin lyase-like superfamily protein (.1) AT4G13710 486 / 2e-169 Pectin lyase-like superfamily protein (.1.2) AT4G24780 470 / 4e-164 Pectin lyase-like superfamily protein (.1.2) AT5G63180 462 / 2e-160 Pectin lyase-like superfamily protein (.1) AT1G04680 461 / 3e-160 Pectin lyase-like superfamily protein (.1) AT1G67750 460 / 5e-160 Pectate lyase family protein (.1) AT4G13210 459 / 2e-159 Pectin lyase-like superfamily protein (.1.2) AT3G27400 453 / 2e-157 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032700 [exp] 727 / 0 AT5G04310 556 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G122000 [exp] 568 / 0 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G175900 [exp] 478 / 1e-166 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 472 / 3e-164 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G339500 [exp] 469 / 1e-163 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 459 / 6e-160 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.010G051800 [exp] 460 / 1e-159 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.015G087800 [exp] 456 / 2e-158 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 454 / 9e-158 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037945 [exp] 633 / 0 AT3G54920 599 / 0.0 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) Lus10023542 [exp] 593 / 0 AT5G04310 579 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014414 [exp] 580 / 0 AT3G53190 703 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023917 [exp] 565 / 0 AT3G53190 696 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 474 / 5e-165 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10014887 [exp] 467 / 6e-163 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 468 / 2e-162 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023679 [exp] 468 / 2e-162 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10022310 [exp] 465 / 5e-162 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011885 [exp] 465 / 9e-162 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Potri.010G229000.1 pacid=42798933 polypeptide=Potri.010G229000.1.p locus=Potri.010G229000 ID=Potri.010G229000.1.v4.1 annot-version=v4.1 ATGAAGCTTCCCAGTATCTACATTCTCTTAATTTGCCTCTTTACTTCTTTCACTCGATTCATTGTTGAAACTACTGCCTTCAATCTCACCCTTCCACACC AACATCCAGACCCTGAGGCTGTTGCTGAAGATGTAAAACGGAGAGTCAATGCATCTCTATCAAGAAGGCACCTTTTGTCCATTCAAGAGAAGGACCAATG CCAAACTGGAAACCCCATCGACGATTGCTGGAGATGCAACTCTAATTGGGCTAACAACCGCCAACGTTTAGCTGACTGCGCCATTGGATTTGGTCAAGGC TCGTTAGGTGGAAGAGGTGGTCAGATCTATGTGGTCACTGACTCCTCTGACTATGATCCAGCCAACCCAAAACCAGGCACCTTACGTTACGGTGTCATCC AAGACCAACCCCTGTGGATCATCTTCTCTTCAAATATGGTCATTAAGCTCAAACATGAGCTTATTTTCAATAGTTACAAAACTATTGATGGCCGTGGCGC AAATGTTCACATTACAGGAAATGGGTGCATAACACTTCAATACGTATCACACATTATTATCCACAACATCCACGTTCACCACTGCAAGCCTTCTGGAAAT ACTAACATAGCAGCATCACCAACACATGTTGGATGGAGAGGGAGATCAGACGGTGATGGCATTTCCATTTTTGGGGCCCAGAAGATTTGGATCGATCACT GTTCTTTATCTTATTGCACTGATGGTTTGATTGATGCTATAATGGGGTCCACTGGGATTACCATATCAAACAACCATTTTACCCACCATGATGAAGTGAT GCTATTGGGTCATGATGATAAGTATGCACTGGACACAGGTATGCAAGTTACCATAGCCTTTAATCACTTCGGCCAAGGGCTGGTGCAACGTATGCCAAGG TGTAGAAGAGGGTATATACATGTGGTGAACAATGATTTTACAGCCTGGGAGATGTATGCTATTGGTGGTAGTGCGAATCCTACCATAAATAGTCAAGGGA ATCGATATACCGCACCAACTGATGATAATGCCAAAGAGGTAACAAAGAGGGTGGACACAAACGAGGGAGACTGGGCAGGTTGGAATTGGAGAACAGATGG GGACATAATGGTAAACGGAGCGTTCTTTGTGCCCTCAGGAGCCGGTCTGAGTGCACAGTATAGTAAAGCCTCCAGTGTGGAACCCAAGTCTGCTGGTTTA ATTCAACAACTCACCTTGAATGCTGGTGTCTTCGGTGACCCTAGAGATGACAGTGGGAGCATTTCTACTCCGGGATTCAGCGGAGGTGGGACTAGCTCCA CAACCAACACCGGCGTCCAGGGGTCCGGGTCCAGCGGTGGTGGCGGCGATTACTTCGGAATGATATTCGGGAGCGGTGCTCCACCACCCACATCTACCAG CTTAATCTTTTTGTCCCTTCTAATTATTTTAATTCTGTGCACCATCACCAACCATGTTGCCTTGGAATCTTTCCCATTATTATCATTATAG
AA sequence Show only first row Show all	>Potri.010G229000.1 pacid=42798933 polypeptide=Potri.010G229000.1.p locus=Potri.010G229000 ID=Potri.010G229000.1.v4.1 annot-version=v4.1 MKLPSIYILLICLFTSFTRFIVETTAFNLTLPHQHPDPEAVAEDVKRRVNASLSRRHLLSIQEKDQCQTGNPIDDCWRCNSNWANNRQRLADCAIGFGQG SLGGRGGQIYVVTDSSDYDPANPKPGTLRYGVIQDQPLWIIFSSNMVIKLKHELIFNSYKTIDGRGANVHITGNGCITLQYVSHIIIHNIHVHHCKPSGN TNIAASPTHVGWRGRSDGDGISIFGAQKIWIDHCSLSYCTDGLIDAIMGSTGITISNNHFTHHDEVMLLGHDDKYALDTGMQVTIAFNHFGQGLVQRMPR CRRGYIHVVNNDFTAWEMYAIGGSANPTINSQGNRYTAPTDDNAKEVTKRVDTNEGDWAGWNWRTDGDIMVNGAFFVPSGAGLSAQYSKASSVEPKSAGL IQQLTLNAGVFGDPRDDSGSISTPGFSGGGTSSTTNTGVQGSGSSGGGGDYFGMIFGSGAPPPTSTSLIFLSLLIILILCTITNHVALESFPLLSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04310			Pectin lyase-like superfamily ...		Potri.010G229000 [exp]	0	1
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Potri.008G088300 [exp]	1.00	0.9056	PtEXPA4,EXPA1.2
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G050700 [exp]	2.44	0.8798
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Potri.013G039000 [exp]	2.82	0.8745
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077700 [exp]	4.89	0.8247
AT4G30020			PA-domain containing subtilase...		Potri.018G143400 [exp]	5.00	0.8425
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Potri.006G063900 [exp]	10.09	0.7669
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.001G200400 [exp]	11.31	0.8150	BGAL1.1
AT5G08260		SCPL35	serine carboxypeptidase-like 3...		Potri.007G072300 [exp]	11.48	0.7396
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Potri.006G247200 [exp]	11.83	0.8147
AT1G09010			glycoside hydrolase family 2 p...		Potri.013G021200 [exp]	15.09	0.7617

Compare expression of checked genes

Potri.010G229000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.