Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04320 77 / 3e-15 Shugoshin C terminus (.1.2) AT3G10440 64 / 7e-11 Shugoshin C terminus (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032600 [exp] 455 / 7e-160 AT3G10440 72 / 2e-13 Shugoshin C terminus (.1) Potri.009G006100 [exp] 78 / 6e-16 AT5G04320 86 / 1e-18 Shugoshin C terminus (.1.2) Potri.004G216000 [exp] 76 / 5e-15 AT5G04320 57 / 4e-09 Shugoshin C terminus (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021420 [exp] 57 / 7e-09 AT5G04320 78 / 1e-15 Shugoshin C terminus (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07557 [poplar] [flax] Shugoshin_C Shugoshin C terminus
Representative CDS sequence Show only first row Show all	>Potri.010G229100.1 pacid=42798562 polypeptide=Potri.010G229100.1.p locus=Potri.010G229100 ID=Potri.010G229100.1.v4.1 annot-version=v4.1 ATGGAGGGTGTTCCGGTTCTTGACACAGAAAACATTAATGTTGCAGGTGACAAAATAAAGGGAGAGAAGCTGGAAAAGGGGTCTTTGGTTGGAATTGCGC AAAGGAAAACGCTTGTTGACATTAACAATTTTCCTGCGCAAAGGAAAATGCTTGCTGATATTAGCAACCTGTCACAGCGAAACCAATATGGGAAATCACA ATCTGTTTTAGTTAGTAAAGAGCATGTTGAGAAGCTCCAACGGGATATCATGGCATTGACAAAGCTTGTTGCAGATAGGAATAAAATCATCGAGTTGAGT GCAATTGAGTTGCAGAAACTGAGAGTCAATTATCAGCAACTACAGCAACAGAATCTGCAACTTGCCCAAACCAACAGCCAGATGTTAGCAGAACTAAATG CGGGTAAAGATAAGCTTAAGGCATATCAACATGAGTTGGGGTGCAAGAATGGCCTGCTTAATGCCAAAAAATTGGAGCTGAAGGAGAAAACAAAGAAAGT TAGAAGCCAGAATATGAGAAATGAGGTTGAAACCATCAAAGGTGACAACGCAGCGCAATTCTCTCAACCAGAGGACAATAAACCTTGCAACACAAAAAGG AAGCGCCAATCAAAAGTTCAATCTTTGGATTCCAGTGCTGTTAAACCAGGTCAAACTGAAGATAATGTTGAGAAGAAGAGTGTTTGTTTGAGAAGGCAAT CTGCTATGTTTAAATCTGGAGAAGAACCCACTGAAAAGAACATTGTTACAAAGAGCGTTTGTTTAAGAAGGCAATCTGCTAGGCTTAAGTCTGGAGAAGA ACCCAATGAAAAGGATATTGATACAAAGAGTGTTTGTTTGAGAAGGCAATCTGCTAGGTTTAAGTCCGGAGAAGAACCCACTGAAAAGGATACTGATACA AAGAGCAGGATATGTACAGGAAGGCAATCCACTAGGGTTAAATCTGAGGATCAAATACAAGAACCAGCTGAAAATTTGTTTCAGACAGATGATGCTAAAT TTCATATTCCTCCATTACATGACGATCCAGTGCATGAAAGTTGTCCTACATCATCAGTTCCATCTGTTAAAATTGAATCTGAAACAGGGAACAGTGTCCC TAGATTTGAAACTCAAGAACTGCAAAGGACATCCTTTCGGCCCACACGTCGAGCAGTCGAGAAAGTTCAGACCTACAAGGAAATTCCACTTAATGTTAAG ATGCGAAGAAGTGAGTGA
AA sequence Show only first row Show all	>Potri.010G229100.1 pacid=42798562 polypeptide=Potri.010G229100.1.p locus=Potri.010G229100 ID=Potri.010G229100.1.v4.1 annot-version=v4.1 MEGVPVLDTENINVAGDKIKGEKLEKGSLVGIAQRKTLVDINNFPAQRKMLADISNLSQRNQYGKSQSVLVSKEHVEKLQRDIMALTKLVADRNKIIELS AIELQKLRVNYQQLQQQNLQLAQTNSQMLAELNAGKDKLKAYQHELGCKNGLLNAKKLELKEKTKKVRSQNMRNEVETIKGDNAAQFSQPEDNKPCNTKR KRQSKVQSLDSSAVKPGQTEDNVEKKSVCLRRQSAMFKSGEEPTEKNIVTKSVCLRRQSARLKSGEEPNEKDIDTKSVCLRRQSARFKSGEEPTEKDTDT KSRICTGRQSTRVKSEDQIQEPAENLFQTDDAKFHIPPLHDDPVHESCPTSSVPSVKIESETGNSVPRFETQELQRTSFRPTRRAVEKVQTYKEIPLNVK MRRSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04320			Shugoshin C terminus (.1.2)		Potri.010G229100 [exp]	0	1
AT4G01270			RING/U-box superfamily protein...		Potri.014G089800 [exp]	4.24	0.7603
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Potri.004G085500 [exp]	7.34	0.6789
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.007G034200 [exp]	7.74	0.6597
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Potri.005G066600 [exp]	18.57	0.6626	CHR927
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Potri.004G185700 [exp]	35.69	0.6446
AT5G57590		BIO1	biotin auxotroph 1, adenosylme...		Potri.006G170400 [exp]	44.89	0.5567
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Potri.018G038000 [exp]	46.57	0.6302	MYB222
AT5G63950		CHR24	chromatin remodeling 24 (.1)		Potri.007G102800 [exp]	48.55	0.5954	CHR932
					Potri.004G065500 [exp]	48.92	0.5512
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Potri.001G129000 [exp]	57.27	0.5641

Compare expression of checked genes

Potri.010G229100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.