Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04360 1399 / 0 ATPU1 ,ATLDA PULLULANASE 1, limit dextrinase (.1) AT2G39930 96 / 6e-20 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) AT4G09020 96 / 8e-20 ATISA3, ISA3 isoamylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G100900 [exp] 95 / 1e-19 AT4G09020 1111 / 0.0 isoamylase 3 (.1) Potri.006G070800 [exp] 86 / 9e-17 AT2G39930 1212 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.018G132500 [exp] 86 / 1e-16 AT2G39930 1217 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038675 [exp] 1296 / 0 AT5G04360 1200 / 0.0 PULLULANASE 1, limit dextrinase (.1) Lus10037943 [exp] 423 / 1e-138 AT5G04360 402 / 6e-131 PULLULANASE 1, limit dextrinase (.1) Lus10000060 [exp] 148 / 1e-41 AT5G04360 143 / 5e-41 PULLULANASE 1, limit dextrinase (.1) Lus10021586 [exp] 82 / 1e-15 AT2G39930 1211 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10017150 [exp] 77 / 3e-14 AT2G39930 723 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10036474 [exp] 71 / 3e-12 AT4G09020 1005 / 0.0 isoamylase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [poplar] [flax] GHD PF02922 [poplar] [flax] CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CL0369 [poplar] [flax] GHD PF11852 [poplar] [flax] DUF3372 Domain of unknown function (DUF3372)
Representative CDS sequence Show only first row Show all	>Potri.010G229300.6 pacid=42798708 polypeptide=Potri.010G229300.6.p locus=Potri.010G229300 ID=Potri.010G229300.6.v4.1 annot-version=v4.1 ATGATGGTGCTTACTTCGCTCTCCTCTTCCCTTCTCTCGTCATTATCATCACTGACCGGTCCGCCTCCTTCAAATTCCAACGTTTATTTTTCTTCTTCAC TTCCTTCTCCACGACGCCGTCTCAATCCAGAACCAAACCACCACCACCGCAACCGCCATCTCTCTCTTCCTCTCCTCTCAAGAACCTCGCCTACACGCTC CATTCACTGCTCCTCTTCCTTCTCTTCCATGCCTCTAGAAGTTTCAACATCCCCTTCCCAGTTACAGGACAGTTTGCTATATTCAAGGGCATTTTGGGTA ACTCAATCTATAATCGCGTGGAATGCGGATGTTGTTAGAGACGGTTCTTGTTATTTATACGCTAGCCAAACCGCTGCATTATCCGTTACTGATGGTGAAG TTGAAGGTCATGACTTTAAAATCAAGCTCGAGGAAGACAGCGGCGGCATTCCACAAAATGTGATTGCGAAATTTCCTCATGTTAGAGATTACAAAGCTTT CAAAGTTCCTTCAACTGTGGATGCCAAATCTCTTGTCAAATGCCAGCTAGCCGTCGCAACATTTGGCTCTGATGGGAAATGCAGCTATGCTACTGGTTTG CAGTTACCTGGTGTTCTAGATGAATTGTTTGCATATGATGGTCCCCTTGGTGCGCATTATTCAGAAGATGCTGTGTCCCTCTACCTGTGGGCTCCAACTG CTCAAGCAGTGTGTGCCTGTGTTTACAAGAATGCGAACAGCAGGGATCCCGTGGAAGTTGTTCAGTTGAAGGAGGTTAATGGAGTTTGGAGTGTTGAAGG ATCAAAAGACTGGGAAGGTTGTTATTATGTGTATGAAGTGTCTGTCTACCATCCTAGCACTTTACACGTTGAAAAATGCTATGCAAATGATCCATATGCT AGAGGGCTCTCACCAGATAGCCAGAGGACATTATTTGTGAATCTTGATTCAGATACTTTAAAACCTGAAGGATGGGAGAAATTAGCTGATGAAAAACCCA TTATACTTTCTTTTTCAGACATAAGTATCTATGAATTGCATGTAAGGGATTTCAGTGCCAATGATCATACTGTGCATCCTGACTTTCAGGGTGGTTATCT GGCCTTCACGCTGGAGGATTCAGCAGGTGTACTTCATCTAAAGAAATTATCAAATGCTGGTATCACTCATGTCCATTTGCTGCCTACCTTTCAATTTGCT GGTGTTGACGATGTCAAGGAGAACTGGAAGTGCGTGGATAGCACAGTGCTGGAAAAATTACTGCCGGATTCAACTGAGCAACAAGCTCAGATCACATTAA TCCAAGATGATGATGGGTATAACTGGGGGTACAATCCTGTTCTATGGGGGGTCCCTAAAGGAAGTTATGCTAGCAACCCAAGTGGTTCATGCCGCACAAT TGAGTTCAGAAAGATGGTTCAGGCCCTTAACCATATCGGCCTTCGTGTTGTGTTGGATGTTGTCTACAATCATTTGCATGGAAATGGTCCCTTTGATGAG AATTCTGTTCTTGACAAGATTGTTCCAGGTTATTATCTGAGAAGAAACACTGATGGGTTTATCGAGCATAGTACATGTGTGAATAACACTGCTAGTGAGC ATTATATGGTTGAGCGGATGATCATTGATGATATGTTAAACTGGGCTGGTAATTATAAGGTTGATGGGTTCCGCTTTGACCTTATGGGTCATATAATGAA AAGCACAATGGTGAAAGCAAAAGATGCAGTCAACAGGCTGACAAAGGAAAGAGATGGAATTGATGGTTCAAGTGTCTATATATATGGAGAAGGTTGGGAC TTTGGTGAAGTTGCTAACAATGGGCGTGGGATAAATGCTTCACAGTTCAATGTTGGTGGGACTGGAATTGGAAGTTTTAATGATCGAATTCGGGATGCAA TGCTTGGGGGATCTCCATTTGGCCATCCTCTCCAGCAAGGATTTGTGACTGGGCTAATGTTGCAGCCTAATGGTCATGATCATGGTGGAAAAGACGTTGA AGAACTCATGCTTTCTGCAGCAAAAGATCACATCCAGGTTGGGATGGCTGGAAATTTGAGGGATTATGTACTGACCAATAGTGATGGGAAAGAGGTAAAA GGGATGGAAGTTTTAACTTATGGTGGGGCACCTGTTGCATACGCTCTACACCCTGCAGAAACAATCAATTATGTTTCTGCTCATGACAATGAAACCCTAT TTGATGTTGTGAGCATGAAGACTCCAATGGAAATTTCTGTGGATGAGAGATGCAGATTAAATCATTTGGCAAGTAGTGTAATAGCATTGTCACAGGGAAT TCCATTTTTCCACTCTGGTGATGAGATGCTACGCTCAAAATCGCTTGATCGTGACTCTTACAACTCTGGTGATTGGTTCAACAGGCTAGATTTCACTTAC AATTCCAATAACTGGGGTGTCGGCCTTCCTCCAAAGCAGAAAAATGAAAAGCACTGGCCACTAATAAGACCAAGACTGGCTGATCCATCCTTCAAGCCTC AGAAGAATCATATCCTTGCCGCTATCAATAATTTTTTAGATGTGTTGCAAATCCGATATTCGTCTCCACTTTTTCGTTTGACGACAGCTAATGCTATTCA GGAACGGGTACGATTCCACAACACCGGTCCTTCATGGGTCCCTGGTGTTATAGTGATGAGTTTTGAAGATGGCCATAGAGGTGTTCCAGGATTAACTCAA CTGGATCCCATCTACTCTTTCATTGTGGTTATCTTCAATGCCAGTCCATCTGAGGTATCTTTTGCCAGTCCTGTATTGCGGGCAAGAACTTTTCAGCTGC ATCCTATACAGGCTATGTCAGCTGATGAAGTTGTGAAGAACTCATCATATGAAACATCCACAGGGTGCTTCACTGTGCCCCCAAGGACAACATCAGTTTT TGTGGAGTATCGGTAA
AA sequence Show only first row Show all	>Potri.010G229300.6 pacid=42798708 polypeptide=Potri.010G229300.6.p locus=Potri.010G229300 ID=Potri.010G229300.6.v4.1 annot-version=v4.1 MMVLTSLSSSLLSSLSSLTGPPPSNSNVYFSSSLPSPRRRLNPEPNHHHRNRHLSLPLLSRTSPTRSIHCSSSFSSMPLEVSTSPSQLQDSLLYSRAFWV TQSIIAWNADVVRDGSCYLYASQTAALSVTDGEVEGHDFKIKLEEDSGGIPQNVIAKFPHVRDYKAFKVPSTVDAKSLVKCQLAVATFGSDGKCSYATGL QLPGVLDELFAYDGPLGAHYSEDAVSLYLWAPTAQAVCACVYKNANSRDPVEVVQLKEVNGVWSVEGSKDWEGCYYVYEVSVYHPSTLHVEKCYANDPYA RGLSPDSQRTLFVNLDSDTLKPEGWEKLADEKPIILSFSDISIYELHVRDFSANDHTVHPDFQGGYLAFTLEDSAGVLHLKKLSNAGITHVHLLPTFQFA GVDDVKENWKCVDSTVLEKLLPDSTEQQAQITLIQDDDGYNWGYNPVLWGVPKGSYASNPSGSCRTIEFRKMVQALNHIGLRVVLDVVYNHLHGNGPFDE NSVLDKIVPGYYLRRNTDGFIEHSTCVNNTASEHYMVERMIIDDMLNWAGNYKVDGFRFDLMGHIMKSTMVKAKDAVNRLTKERDGIDGSSVYIYGEGWD FGEVANNGRGINASQFNVGGTGIGSFNDRIRDAMLGGSPFGHPLQQGFVTGLMLQPNGHDHGGKDVEELMLSAAKDHIQVGMAGNLRDYVLTNSDGKEVK GMEVLTYGGAPVAYALHPAETINYVSAHDNETLFDVVSMKTPMEISVDERCRLNHLASSVIALSQGIPFFHSGDEMLRSKSLDRDSYNSGDWFNRLDFTY NSNNWGVGLPPKQKNEKHWPLIRPRLADPSFKPQKNHILAAINNFLDVLQIRYSSPLFRLTTANAIQERVRFHNTGPSWVPGVIVMSFEDGHRGVPGLTQ LDPIYSFIVVIFNASPSEVSFASPVLRARTFQLHPIQAMSADEVVKNSSYETSTGCFTVPPRTTSVFVEYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Potri.010G229300 [exp]	0	1
AT2G36810			ARM repeat superfamily protein...		Potri.006G120800 [exp]	6.16	0.7042
AT5G20170			RNA polymerase II transcriptio...		Potri.015G057100 [exp]	13.41	0.6610
AT5G35930			AMP-dependent synthetase and l...		Potri.019G043800 [exp]	14.21	0.6764
AT1G04140			Transducin family protein / WD...		Potri.014G193900 [exp]	18.16	0.6204
AT3G46960			RNA helicase, ATP-dependent, S...		Potri.009G041200 [exp]	23.17	0.6658
AT1G67960		POD1	POLLEN DEFECTIVE IN GUIDANCE 1...		Potri.010G103400 [exp]	31.62	0.5931
AT1G43860			sequence-specific DNA binding ...		Potri.005G186700 [exp]	31.93	0.6215
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Potri.010G128600 [exp]	33.88	0.6338	PFT1.1
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Potri.010G028200 [exp]	35.07	0.6349
AT3G28430			unknown protein		Potri.006G073600 [exp]	38.88	0.6199

Compare expression of checked genes

Potri.010G229300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.