Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25240 62 / 8e-13 SKS1 SKU5 similar 1 (.1) AT1G21860 57 / 4e-11 SKS7 SKU5 similar 7 (.1) AT3G13390 56 / 2e-10 SKS11 SKU5 similar 11 (.1) AT1G75790 54 / 7e-10 SKS18 SKU5 similar 18 (.1) AT1G55570 54 / 9e-10 SKS12 SKU5 similar 12 (.1) AT5G48450 54 / 9e-10 SKS3 SKU5 similar 3 (.1) AT1G21850 53 / 1e-09 SKS8 SKU5 similar 8 (.1) AT5G51480 53 / 1e-09 SKS2 SKU5 similar 2 (.1) AT2G23630 51 / 8e-09 SKS16 SKU5 similar 16 (.1) AT1G76160 49 / 3e-08 SKS5 SKU5 similar 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032200 [exp] 84 / 1e-20 AT4G12420 472 / 2e-160 Cupredoxin superfamily protein (.1.2) Potri.008G032100 [exp] 81 / 2e-19 AT5G48450 461 / 3e-156 SKU5 similar 3 (.1) Potri.002G021000 [exp] 65 / 1e-13 AT1G75790 670 / 0.0 SKU5 similar 18 (.1) Potri.012G126400 [exp] 63 / 3e-13 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.015G127200 [exp] 60 / 5e-12 AT4G25240 882 / 0.0 SKU5 similar 1 (.1) Potri.004G180500 [exp] 55 / 2e-10 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.014G177700 [exp] 52 / 5e-09 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.003G224100 [exp] 50 / 2e-08 AT1G55570 855 / 0.0 SKU5 similar 12 (.1) Potri.001G000500 [exp] 50 / 2e-08 AT1G55570 853 / 0.0 SKU5 similar 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023539 [exp] 80 / 5e-19 AT4G12420 496 / 4e-170 Cupredoxin superfamily protein (.1.2) Lus10040424 [exp] 79 / 1e-18 AT5G48450 468 / 5e-159 SKU5 similar 3 (.1) Lus10037941 [exp] 72 / 4e-16 AT4G12420 519 / 2e-179 Cupredoxin superfamily protein (.1.2) Lus10038672 [exp] 68 / 5e-15 AT1G75790 163 / 7e-47 SKU5 similar 18 (.1) Lus10031143 [exp] 64 / 2e-13 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10027207 [exp] 63 / 5e-13 AT5G51480 840 / 0.0 SKU5 similar 2 (.1) Lus10038920 [exp] 62 / 1e-12 AT5G51480 851 / 0.0 SKU5 similar 2 (.1) Lus10031722 [exp] 59 / 1e-11 AT4G25240 897 / 0.0 SKU5 similar 1 (.1) Lus10038239 [exp] 58 / 3e-11 AT5G48450 858 / 0.0 SKU5 similar 3 (.1) Lus10025860 [exp] 57 / 6e-11 AT5G48450 882 / 0.0 SKU5 similar 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G229500.2 pacid=42799503 polypeptide=Potri.010G229500.2.p locus=Potri.010G229500 ID=Potri.010G229500.2.v4.1 annot-version=v4.1 ATGCAGTGGACGGCACAAACTCTCCAATTGTGCCTGGTTCAAGTTGAACTTATGTGTTTCAAATCAGGGACCAAATTGAAACTTTTTCTTACTTTCCTAT CCATCAATTACCAGAAAGCTGGTGGAGGATTTAGTCCCATCAGAGTCAACAATCGTAAAGTTCTTAGTGTACCTCTCCCTAAACCAGAAGATGAATTCGA CCTTCTCATTGGTGATTGGAATTCACAAAGCCATGCACAAGGTAATTTACCCCATCACATAAATTAG
AA sequence Show only first row Show all	>Potri.010G229500.2 pacid=42799503 polypeptide=Potri.010G229500.2.p locus=Potri.010G229500 ID=Potri.010G229500.2.v4.1 annot-version=v4.1 MQWTAQTLQLCLVQVELMCFKSGTKLKLFLTFLSINYQKAGGGFSPIRVNNRKVLSVPLPKPEDEFDLLIGDWNSQSHAQGNLPHHIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21860		SKS7	SKU5 similar 7 (.1)		Potri.010G229500 [exp]	0	1
AT1G22060			unknown protein		Potri.002G091700 [exp]	2.82	0.8738
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Potri.001G151800 [exp]	7.14	0.8135	ATBI.1
AT3G19720		DRP5B, ARC5	Dynamin related protein 5B, AC...		Potri.018G027001 [exp]	9.38	0.8604
AT1G33230			TMPIT-like protein (.1)		Potri.011G147500 [exp]	11.09	0.8676
AT3G24740			Protein of unknown function (D...		Potri.002G216600 [exp]	14.07	0.8326
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Potri.004G210400 [exp]	21.44	0.8093
AT2G25355			PNAS-3 related (.1.2)		Potri.015G075400 [exp]	21.93	0.7882
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.003G184000 [exp]	25.45	0.8028	HSP70.8
AT5G58160			actin binding (.1)		Potri.006G185601 [exp]	26.38	0.8353
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Potri.001G258700 [exp]	26.45	0.8285

Compare expression of checked genes

Potri.010G229500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.