Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10480 417 / 1e-143 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT3G10490 402 / 2e-137 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT5G04410 275 / 2e-86 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT3G10500 257 / 5e-80 NAC ANAC053 NAC domain containing protein 53 (.1) AT3G17730 209 / 3e-65 NAC ANAC057 NAC domain containing protein 57 (.1) AT5G64060 200 / 2e-60 NAC ANAC103 NAC domain containing protein 103 (.1) AT3G03200 202 / 1e-59 NAC ANAC045 NAC domain containing protein 45 (.1) AT5G17260 200 / 4e-59 NAC ANAC086 NAC domain containing protein 86 (.1) AT1G65910 203 / 7e-59 NAC ANAC028 NAC domain containing protein 28 (.1) AT5G04400 196 / 3e-58 NAC ANAC077 NAC domain containing protein 77 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G031800 [exp] 290 / 2e-92 AT5G04410 511 / 6e-177 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.010G229900 [exp] 272 / 2e-85 AT5G04410 481 / 4e-165 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.015G030200 [exp] 215 / 2e-67 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.008G081500 [exp] 209 / 6e-64 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.010G174600 [exp] 208 / 1e-63 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.012G038100 [exp] 202 / 1e-61 AT3G17730 339 / 4e-118 NAC domain containing protein 57 (.1) Potri.005G058900 [exp] 201 / 4e-60 AT5G64060 256 / 3e-82 NAC domain containing protein 103 (.1) Potri.007G109100 [exp] 202 / 5e-60 AT5G09330 265 / 6e-84 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) Potri.017G139500 [exp] 206 / 1e-59 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038670 [exp] 514 / 2e-171 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10037939 [exp] 484 / 3e-170 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10023537 [exp] 445 / 6e-155 AT3G10490 331 / 2e-110 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10040422 [exp] 313 / 1e-103 AT3G10480 263 / 6e-84 NAC domain containing protein 50 (.1.2.3) Lus10028824 [exp] 247 / 5e-76 AT5G04410 378 / 5e-125 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10017458 [exp] 223 / 5e-67 AT5G04410 379 / 8e-126 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10042284 [exp] 210 / 1e-64 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 210 / 2e-64 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 203 / 2e-58 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10020794 [exp] 204 / 1e-57 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.010G229700.1 pacid=42797834 polypeptide=Potri.010G229700.1.p locus=Potri.010G229700 ID=Potri.010G229700.1.v4.1 annot-version=v4.1 ATGGGTCCTGAAACTTCCTCGCAAGAACAGCAATTACGACTAGCACTGACAACCCCAGCACCACCAGCTTCAGCACCGGCAAAAACGACACCAGTCAGTA CTAAAACGACAGCGTTAGCTCCTGGGTTTCGATTCCACCCAACAGATGAAGAACTCGTTATCTATTACTTGAAACGGAAGGTTTCCAATAAACCTTTCCG TTTCAATGCTATTTCTGAGGTCGATATTTACAAAAACGAACCTTGGGACCTTGCAGATAAGTCAAGGTTGAAAAGCAGAGACCAAGAATGGTACTTTTTC AGTCCACTGGACAAGAAATATGGGAATGGAGCAAGAATGAATAGGGCGACAGGCAAAGGATACTGGAAAGCTACTGGAAAGGACCGGGAAATTCGGCGAG AGTGTCAACTCCTTGCAATGAAGAAAACTCTTGTGTTTCATAGTGGGCGTGCACCAGGTGGGCTGCGCACCAACTGGGTTATGCACGAGTACCGGCTTAT TGATGAAGAATTGGAAAGAACCGGAGCTATGCAGATCGACTCATATGTCCTCTGTAGAGTGTTCCACAAGAACAATATAGGACCACCAACTGGGAACCGC TATGCCCCTTTCATCGAGGAGGAGTGGGATGATCGTGGAGCAGCGCTCATTCCAGGAGAAGATGCTGCTGATGAGGTGGTGGTTACTTATGATACTGGTG GTGAAATGCACCGTACCGAGCAGGATAGTCATTCCATCAATAAAAGTCCTCTTGGTATTACCGAAGTTCCGGGGGACTCTCAAAATGCCTTACCTGTGTG TAAGACTGAAAGTGTGGAGGATTGTCCTCCACTGTGTGTGCTAAATACAGAAGCACCCTTCCCTCTTCTCCAGTATAAAAGAAGAAAGCACAATAACGAG ACTGGGTCTAACCGTTCAAATGGTTCGGAGAACTCAACAAGGACAAGTCAGGATCCTTGCTCATCCACAACAACAACAGCAGCAACAACATCAGCAGAAA TGATGATGGCAACAACTTCAGCAACAACAACGGCAATATCTGCGTTGCTAGAATTTTCGCTGATGGAACCTCTGGAACCCAAAGAAAATCCTCGTGTTCC CCCACCTGCACTAGATGCTGCTAGTCTTGATTCATCAATGTCTCCTAGCTGCAGGAAGTTTATCAATGATTTGCAGAGTGAGATCCGCAAGATTTCTGTT GAGAGAGAGACATTGAAGCTTGAAATGATGAGTGCTCACGCCATGATTAACATTCTCCAGTCTCGAGTTGACTTTCTCAACAAGGAAAATGAGGATTTGA AAAGGAGTGTCCACGCCAAGTGA
AA sequence Show only first row Show all	>Potri.010G229700.1 pacid=42797834 polypeptide=Potri.010G229700.1.p locus=Potri.010G229700 ID=Potri.010G229700.1.v4.1 annot-version=v4.1 MGPETSSQEQQLRLALTTPAPPASAPAKTTPVSTKTTALAPGFRFHPTDEELVIYYLKRKVSNKPFRFNAISEVDIYKNEPWDLADKSRLKSRDQEWYFF SPLDKKYGNGARMNRATGKGYWKATGKDREIRRECQLLAMKKTLVFHSGRAPGGLRTNWVMHEYRLIDEELERTGAMQIDSYVLCRVFHKNNIGPPTGNR YAPFIEEEWDDRGAALIPGEDAADEVVVTYDTGGEMHRTEQDSHSINKSPLGITEVPGDSQNALPVCKTESVEDCPPLCVLNTEAPFPLLQYKRRKHNNE TGSNRSNGSENSTRTSQDPCSSTTTTAATTSAEMMMATTSATTTAISALLEFSLMEPLEPKENPRVPPPALDAASLDSSMSPSCRKFINDLQSEIRKISV ERETLKLEMMSAHAMINILQSRVDFLNKENEDLKRSVHAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Potri.010G229700 [exp]	0	1
AT3G61370			Protein of unknown function (D...		Potri.016G069200 [exp]	3.00	0.9118
AT1G07310			Calcium-dependent lipid-bindin...		Potri.001G249300 [exp]	3.87	0.9071
AT1G09710	MYB		Homeodomain-like superfamily p...		Potri.002G106500 [exp]	5.74	0.9076
AT2G32840			proline-rich family protein (....		Potri.001G229800 [exp]	6.00	0.9074
AT5G43210			Excinuclease ABC, C subunit, N...		Potri.001G260600 [exp]	8.12	0.8958
AT1G07030			Mitochondrial substrate carrie...		Potri.009G077600 [exp]	9.79	0.8898
AT1G36370		SHM7	serine hydroxymethyltransferas...		Potri.001G212000 [exp]	9.79	0.8588	SHMT9
AT1G36370		SHM7	serine hydroxymethyltransferas...		Potri.002G090200 [exp]	11.95	0.8857	SHMT4
AT1G10790			unknown protein		Potri.001G210600 [exp]	12.24	0.8290
AT1G29220			transcriptional regulator fami...		Potri.004G058700 [exp]	13.41	0.8817

Compare expression of checked genes

Potri.010G229700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.