Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55620 473 / 1e-171 eIF6A, EMB1624 embryo defective 1624, eukaryotic initiation facor 6A, Translation initiation factor IF6 (.1) AT2G39820 352 / 3e-124 eIF6B eukaryotic initiation factor 6B, Translation initiation factor IF6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G064800 [exp] 459 / 2e-166 AT3G55620 454 / 2e-164 embryo defective 1624, eukaryotic initiation facor 6A, Translation initiation factor IF6 (.1) Potri.005G098700 [exp] 318 / 2e-111 AT3G55620 311 / 5e-109 embryo defective 1624, eukaryotic initiation facor 6A, Translation initiation factor IF6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037938 [exp] 473 / 6e-172 AT3G55620 473 / 4e-172 embryo defective 1624, eukaryotic initiation facor 6A, Translation initiation factor IF6 (.1) Lus10038669 [exp] 345 / 4e-122 AT3G55620 334 / 3e-118 embryo defective 1624, eukaryotic initiation facor 6A, Translation initiation factor IF6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0197 [poplar] [flax] GME PF01912 [poplar] [flax] eIF-6 eIF-6 family
Representative CDS sequence Show only first row Show all	>Potri.010G229800.1 pacid=42797177 polypeptide=Potri.010G229800.1.p locus=Potri.010G229800 ID=Potri.010G229800.1.v4.1 annot-version=v4.1 ATGGCGAGCAGACTTCAGTTTGAGAATAACTGTGAAGTTGGTGTGTTTTCCAAGTTGACCAATGCGTACTGCTTAGTTGCAATCGGTGGATCAGAAAGCT TCTACAGCACTTTTGAGGCAGAGTTAGCTGACGTCATTCCTGTCGTTAAGACCTCAATTGCTGGCACTAGGATAATTGGACGGCTATGTGCTGGAAACAA AAATGGGCTTCTTGTGCCTCACACCACCACTGATCAAGAGCTCCAGCATTTGAGAAACAGCCTACCTGATCAAGTCGTTGTTCAGAGGATTGACGAGAAA CTATCTGCTTTGGGTAATTGCATAGCATGCAATGATCATGTTGCCCTTGCACACACTGATCTGGACAGGGAAACTGAGGAGATAATTGCTGATGTTCTCG GGGTTGAAGTGTTTAGGCAGACAATTGCTGGCAACATTCTTGTGGGGAGCTACTGTGCCTTCTCCAACAGAGGTGGTTTGGTCCATCCTCATACATCCAT TGAAGACTTGGATGAGCTCTCCACCCTTCTTCAGGTCCCCTTAGTTGCAGGTACTGTAAACCGTGGTAGCGAAGTGATCGGTGCTGGAATAACAGTAAAC GACTGGACAGCCTTCTGTGGGTCCGACACTACAGCTACCGAACTATCTGTAATTGAAAGCGTCTTCAAGTTGAGGGAAGCTCGACCTAGTGCCATTGTTG ATGAGATGAGGAAATCATTAATTGACAGTTATGTTTGA
AA sequence Show only first row Show all	>Potri.010G229800.1 pacid=42797177 polypeptide=Potri.010G229800.1.p locus=Potri.010G229800 ID=Potri.010G229800.1.v4.1 annot-version=v4.1 MASRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIAGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDEK LSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGITVN DWTAFCGSDTTATELSVIESVFKLREARPSAIVDEMRKSLIDSYV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Potri.010G229800 [exp]	0	1
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Potri.016G087900 [exp]	4.00	0.7863
AT2G21250			NAD(P)-linked oxidoreductase s...		Potri.009G125100 [exp]	10.34	0.7930	S6PDH.2
AT3G49470		NACA2	nascent polypeptide-associated...		Potri.015G003300 [exp]	20.19	0.7416
AT1G27390		TOM20-2	translocase outer membrane 20-...		Potri.001G054900 [exp]	22.04	0.7539	Pt-TOM20.1
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Potri.013G016800 [exp]	23.23	0.7374	RPT5.2
AT5G11010			Pre-mRNA cleavage complex II p...		Potri.012G073500 [exp]	33.04	0.7169
AT1G05430			unknown protein		Potri.010G086300 [exp]	35.77	0.6940
AT3G53230			ATPase, AAA-type, CDC48 protei...		Potri.016G091600 [exp]	39.11	0.6925	Pt-CDC48.2
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.010G164200 [exp]	46.74	0.7084	ATS9.1
AT3G20240			Mitochondrial substrate carrie...		Potri.008G004100 [exp]	54.63	0.6879

Compare expression of checked genes

Potri.010G229800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.