Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NAC2.1,NAC049
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04410 481 / 4e-165 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT3G10500 476 / 3e-163 NAC ANAC053 NAC domain containing protein 53 (.1) AT3G10490 264 / 5e-85 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT3G10480 266 / 3e-83 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT5G09330 243 / 6e-74 NAC VNI1, ANAC082 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) AT5G64060 236 / 1e-72 NAC ANAC103 NAC domain containing protein 103 (.1) AT1G34190 231 / 1e-68 NAC ANAC017 NAC domain containing protein 17 (.1) AT1G34180 228 / 3e-67 NAC ANAC016 NAC domain containing protein 16 (.1.2) AT1G32870 214 / 9e-63 NAC ANAC13, ANAC013 Arabidopsis NAC domain containing protein 13, NAC domain protein 13 (.1.2) AT1G65910 217 / 1e-62 NAC ANAC028 NAC domain containing protein 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G031800 [exp] 943 / 0 AT5G04410 511 / 6e-177 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.010G229700 [exp] 273 / 8e-86 AT3G10480 418 / 8e-144 NAC domain containing protein 50 (.1.2.3) Potri.007G109100 [exp] 236 / 1e-71 AT5G09330 265 / 6e-84 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) Potri.002G061300 [exp] 231 / 6e-68 AT1G34190 432 / 3e-145 NAC domain containing protein 17 (.1) Potri.005G058900 [exp] 224 / 1e-67 AT5G64060 256 / 3e-82 NAC domain containing protein 103 (.1) Potri.005G200100 [exp] 223 / 3e-65 AT1G34190 447 / 2e-151 NAC domain containing protein 17 (.1) Potri.017G139500 [exp] 221 / 7e-64 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.010G174600 [exp] 212 / 1e-63 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.015G030200 [exp] 208 / 1e-63 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017458 [exp] 474 / 5e-163 AT5G04410 379 / 8e-126 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10028824 [exp] 459 / 2e-156 AT5G04410 378 / 5e-125 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10037939 [exp] 271 / 1e-85 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10023537 [exp] 266 / 1e-83 AT3G10490 331 / 2e-110 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10038670 [exp] 270 / 6e-79 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10028713 [exp] 228 / 4e-67 AT1G34190 392 / 2e-130 NAC domain containing protein 17 (.1) Lus10020896 [exp] 220 / 4e-66 AT5G09330 276 / 2e-88 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) Lus10042284 [exp] 208 / 8e-63 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 208 / 1e-62 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 213 / 7e-61 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.010G229900.2 pacid=42799605 polypeptide=Potri.010G229900.2.p locus=Potri.010G229900 ID=Potri.010G229900.2.v4.1 annot-version=v4.1 ATGGGCAGTAGTGACTCGGCGACTTCACTTGCTCCCGGGTTTCGATTCCACCCGACGGATGAGGAGCTTGTCCGTTACTATCTTAAACGGAAGGTCACTA ACAAACCGTTCCGTTTGGACGCCATCTCCGTCACCGATGTTTATAAATCTGAGCCGTGGGATCTTCCAGTTAAGTCAAAATTGAAAAGCAGGGATTTAGA ATGGTATTTCTTTAGTATGCTGGATAAGAAGTATGGAAATGGGGCCAAGACGAACCGGGCCACTGAGAAAGGGTACTGGAAAACGACTGGGAAAGACAGG CCTATTAATTGGAACTCACGAGTTGTGGGGATGAAGAAGACCCTTGTGTATCATCAGGGTCGAGCCCCACGTGGTGAGCGCTCGAATTGGGTAATGCATG AGTATCGGCTTGCTGATGAGGAGCTGGAGAAAGCGGGAATTGCTCAAGATGCATTTGTGCTTTGTAGGATTTTCCAAAAGAGCGGGACAGGGCCAAAGAA TGGGGAGCAGTATGGGGCACCGTTTATTGAGGAGGAATGGGAGAATGATGAGGTGCCTCTCTTGCCAAGTGAAGAGATGGTGCCAGCTGGAGAAGCACCA GTTGGTGATGGCTCATACCTGGAACTGAATGAGCTTGACCAGAATTTTGACAGTGGAATTACATCTGAAAATACTGCTCGTCCACTAAACTTCTATTATG GGGAAACAAGCAACCATGTGGAACAGCCCAGTAACTTCAGTGACAATGATATAAAGCCTGTGATAAGAGGGGCGGAGAATAGAAATGGTCCAGCTCCACC AGCTGACCAAAACTTGGATTTACCTGGACAATATGAGATGGATGCAGACAAAAAAGAACACAATGCGGAGCCTATCAATATTGTGAATGCTCTCAATGCA AATTATTTGTTTGATGAATCATACTTGGATGCACTTGGTGATCTTCCACCGAGTGAAGGATTTTTCCTGGAAGCTAATGATCTTTCAAAGCCTGTGGAGC CAGAGACCGGTGGAGATTCCTCAGGTTTTGACATGGTGGATGAGTACCTCAATTTCTTTGATGCTGTTGATGAGAACATGTCTTTTGATCCTTCTGATAT CTTCGGAAGTGAGACTGCTGTTTCTGACCAACTTCCACCCCAAGAGGATGTAAAGGGACAAACTGAAGAACTGTCCACGGCAAGCCTAAACCTATTAGAA ACACATGGCACTATTGATCCATCTTCATCAAAGCAAAAGCCAGAGGCCATGAAATTTGATTCTGGTGCAGATTTCAAATATCCATTTATCAAGCAGGCTA GTCACAGGTTGGGGAACATTCCTGCACCTCCTGCCCTTGCTTCTGAGTTCCCTTCCAAGGACGCTGCTCTTCACTTACATCCAGCATCTTCCAGCTCAAT TAACGTTACTGCTGGTATGATAAGAATAGAAAACATGAGCTTAGGTGGCAATGAGATGGAATGGTCATTTGGCAAGAACGGGAATGTCAATATCATCCTT TCTTTTGGTTTGCCACAACAAGGTGGTCCTGCCAGTCTGGTGCCGATGAATAGCTTATTCCCAGGCAAAACAGAGTCGGTGGTGTCGCGAGGTTGGCTGT ACTTGATGTTCTTTTGGGTCCTAATTCTCTCTGTGAGTTATAAAATCGGGACCTGTATCTGTGCCAAGTAA
AA sequence Show only first row Show all	>Potri.010G229900.2 pacid=42799605 polypeptide=Potri.010G229900.2.p locus=Potri.010G229900 ID=Potri.010G229900.2.v4.1 annot-version=v4.1 MGSSDSATSLAPGFRFHPTDEELVRYYLKRKVTNKPFRLDAISVTDVYKSEPWDLPVKSKLKSRDLEWYFFSMLDKKYGNGAKTNRATEKGYWKTTGKDR PINWNSRVVGMKKTLVYHQGRAPRGERSNWVMHEYRLADEELEKAGIAQDAFVLCRIFQKSGTGPKNGEQYGAPFIEEEWENDEVPLLPSEEMVPAGEAP VGDGSYLELNELDQNFDSGITSENTARPLNFYYGETSNHVEQPSNFSDNDIKPVIRGAENRNGPAPPADQNLDLPGQYEMDADKKEHNAEPINIVNALNA NYLFDESYLDALGDLPPSEGFFLEANDLSKPVEPETGGDSSGFDMVDEYLNFFDAVDENMSFDPSDIFGSETAVSDQLPPQEDVKGQTEELSTASLNLLE THGTIDPSSSKQKPEAMKFDSGADFKYPFIKQASHRLGNIPAPPALASEFPSKDAALHLHPASSSSINVTAGMIRIENMSLGGNEMEWSFGKNGNVNIIL SFGLPQQGGPASLVPMNSLFPGKTESVVSRGWLYLMFFWVLILSVSYKIGTCICAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Potri.010G229900 [exp]	0	1	Pt-NAC2.1,NAC049
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Potri.007G011100 [exp]	1.00	0.9306
AT2G24360			Protein kinase superfamily pro...		Potri.006G279900 [exp]	1.73	0.9211
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Potri.002G061400 [exp]	2.44	0.9243
AT5G22080			Chaperone DnaJ-domain superfam...		Potri.009G016700 [exp]	3.31	0.9049
AT5G48655			RING/U-box superfamily protein...		Potri.003G148300 [exp]	3.46	0.9161
AT5G38210			Protein kinase family protein ...		Potri.017G118250 [exp]	7.41	0.9173
AT3G22750			Protein kinase superfamily pro...		Potri.005G213200 [exp]	7.48	0.8986
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Potri.009G165200 [exp]	8.66	0.8984
AT4G10810			unknown protein		Potri.002G173700 [exp]	11.09	0.8758
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Potri.013G025000 [exp]	11.48	0.9013	Pt-HAP5.3

Compare expression of checked genes

Potri.010G229900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.