Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20510 478 / 7e-164 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT4G05160 468 / 3e-160 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 457 / 1e-155 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 457 / 2e-155 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 456 / 3e-155 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 443 / 3e-150 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 437 / 8e-148 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 367 / 9e-121 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G65060 362 / 1e-118 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21230 352 / 2e-114 4CL5 4-coumarate:CoA ligase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G031500 [exp] 1055 / 0 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 465 / 7e-159 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.012G094800 [exp] 462 / 8e-158 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.005G248500 [exp] 462 / 1e-157 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.017G112800 [exp] 448 / 2e-152 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 445 / 4e-151 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G033600 [exp] 439 / 1e-148 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G095000 [exp] 431 / 2e-145 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.003G099700 [exp] 427 / 4e-144 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037934 [exp] 757 / 0 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 744 / 0 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10015998 [exp] 468 / 7e-160 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 462 / 5e-155 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 449 / 3e-152 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10021431 [exp] 448 / 3e-152 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 446 / 1e-151 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 426 / 2e-143 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10036994 [exp] 423 / 1e-142 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 415 / 3e-139 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G230200.1 pacid=42798619 polypeptide=Potri.010G230200.1.p locus=Potri.010G230200 ID=Potri.010G230200.1.v4.1 annot-version=v4.1 ATGCCTGCTGAAGAATTGTGGACTAGTATCATCACCGAGAAGGAAGCTGACAATGCTCAATCCAAGAGTGGTTTCAATCCAAAAACCGGAATTTATCACT CTTTACATCAACTTGGAGAAAATCTCCAAATCCCCACTAGACATGACTTAGATACGTCCAGTTATGTGCTATCCCAGTTCCCCCATCCTGATCATGCTGA GACTAAAGTTGCACTTGTTGATTTGGCTACCAACCAGCAAATCACCTATGCTCAGCTTCATCGATCTATCCATGCCCTTGCATCAGGCTTGTACAATGGT CTTGGAGTCCGAAAAGGTGATGTGGTGTTTCTTCTGTCACCAAACTCAATCTTGTACCCGACAATATGTCTAGCTGTATTTTCCATTGGAGCAATCCTTA GCCCTGCCAACCCAGCTAACACAATATCAGAAATTTTGAAACAAATACGGGACTCGGGTGCTAAACTTGTCATCTCAGCACCAGAGGAGTTGCATAAGTT GGTTGAAAATGGAGTGCCTACACTAGTTACAACTCGAGAGTCAAATGACGATTCACTATCTGTCAAAGAACTAATTGAATGTACTGGTCCGCTTGAGTTG CCACAGGTCAGGATAACTCAATCAGACACTGCAGCTATACTATACTCTTCAGGTACTACTGGCACAAGCAAAGGTGTGATATTAACACATTCAAACTTCA TAGCCATCATGACCCTCCTGAAATGGTCAGTCTATGCAAGTTCATCGCAAAATGACATATTCTTGTGCTTCGTCCCAATATTTCACATCTACGGCCTTGC GTTTTTCAGGTTAGGATTATTCTGTGCTGGAATTACTACTGTGTTGATGCAAAGATTTGATTTTCAAGCAATGCTTGATGCTGTTCAAGCTTACAAAATT AATAACATTCCTGCAGTGCCTCCAGTGATACTTGGGCTAGTGAAACATGCTAACAAAGTCAAGTGTGACTTGTCATCTTTAAGAAGGGTGGGATCTGGGG CTGCCCCATTGAGTAAGGAACTGTCTGACGAGTTTAGGCAAAGGTTTCCATGGGTAGAGCTAAGGCAAGGATATGGGCTAACCGAAAGCTGTGGTGCAAC AACCTTTTTCATCTCTGATGAGCAGGCTAAGGCACATCCAGCTTCTTGTGGAAGGCTCGTGCCAACTTTCAGTGCTAAGATTGTAGATACTGAAACGGGA TCAGCTTTGCCACCTGGTAGAAAAGGAGAGCTGTGGTTGAAGAGTCCTACTATAATGAAAGGGTACTTGGGAAATGAGGCCGCTACTGCTGCAACATTTG ATCCTGATGGTTGGCTGAAAACTGGTGATATGGGTTATTTTGATGAAGATGGATTTCTTCATATTGTTGATCGGATTAAGGAGCTGATCAAGCACAATGG GTATCAGGTGGCTCCGGCGGAATTGGAAGCTATTCTTCTGGGTCATCCCCAAGTACTTGATGCAGCAGTTATACCTGTTGAAGATGAAGAAGCTGGACAG ATACCAATGGCATATGTGGTGAGAACAGCTGGTTCTGAACTCACGGAAGAAAAAGTCATTCAATTTGTTGCTAATCAGGTAGCCCCATACAAGAAAGTAC GAAGAGTGGGTTTCATCAGCGCCATTCCAAAGTCTGCTGCGGGCAAAATCTTGAGGAAGGAGCTTGTATCCCACAGCCAACAAGTTATCTCAAAATTGTA A
AA sequence Show only first row Show all	>Potri.010G230200.1 pacid=42798619 polypeptide=Potri.010G230200.1.p locus=Potri.010G230200 ID=Potri.010G230200.1.v4.1 annot-version=v4.1 MPAEELWTSIITEKEADNAQSKSGFNPKTGIYHSLHQLGENLQIPTRHDLDTSSYVLSQFPHPDHAETKVALVDLATNQQITYAQLHRSIHALASGLYNG LGVRKGDVVFLLSPNSILYPTICLAVFSIGAILSPANPANTISEILKQIRDSGAKLVISAPEELHKLVENGVPTLVTTRESNDDSLSVKELIECTGPLEL PQVRITQSDTAAILYSSGTTGTSKGVILTHSNFIAIMTLLKWSVYASSSQNDIFLCFVPIFHIYGLAFFRLGLFCAGITTVLMQRFDFQAMLDAVQAYKI NNIPAVPPVILGLVKHANKVKCDLSSLRRVGSGAAPLSKELSDEFRQRFPWVELRQGYGLTESCGATTFFISDEQAKAHPASCGRLVPTFSAKIVDTETG SALPPGRKGELWLKSPTIMKGYLGNEAATAATFDPDGWLKTGDMGYFDEDGFLHIVDRIKELIKHNGYQVAPAELEAILLGHPQVLDAAVIPVEDEEAGQ IPMAYVVRTAGSELTEEKVIQFVANQVAPYKKVRRVGFISAIPKSAAGKILRKELVSHSQQVISKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.010G230200 [exp]	0	1
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Potri.004G036400 [exp]	3.46	0.8496
AT2G26100			Galactosyltransferase family p...		Potri.018G053150 [exp]	6.48	0.8819
					Potri.010G228883 [exp]	14.69	0.8713
					Potri.011G005050 [exp]	16.15	0.8625
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Potri.010G228766 [exp]	20.49	0.8562
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Potri.004G090666 [exp]	22.27	0.8427
AT4G33060			Cyclophilin-like peptidyl-prol...		Potri.006G225167 [exp]	22.58	0.8133
AT1G27700			Syntaxin/t-SNARE family protei...		Potri.004G090200 [exp]	23.36	0.8495
AT5G06350			ARM repeat superfamily protein...		Potri.011G095700 [exp]	28.33	0.8501
AT1G48900			Signal recognition particle, S...		Potri.009G047902 [exp]	30.06	0.7274

Compare expression of checked genes

Potri.010G230200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.