Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04420 657 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT3G05420 440 / 3e-148 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 433 / 7e-146 ACBP5 acyl-CoA binding protein 5 (.1) AT5G18590 204 / 6e-58 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G18610 127 / 4e-31 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 109 / 3e-25 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 85 / 2e-17 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT3G07720 78 / 1e-15 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G04670 79 / 4e-15 Met-10+ like family protein / kelch repeat-containing protein (.1) AT1G68050 78 / 6e-15 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G031200 [exp] 871 / 0 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.005G026900 [exp] 431 / 1e-144 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.013G018800 [exp] 375 / 6e-123 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G214900 [exp] 224 / 3e-65 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G022000 [exp] 218 / 6e-63 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G030901 [exp] 172 / 2e-51 AT5G04420 120 / 1e-32 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.005G013000 [exp] 136 / 5e-34 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 127 / 6e-31 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 122 / 2e-29 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037933 [exp] 717 / 0 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10038666 [exp] 716 / 0 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10028825 [exp] 675 / 0 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10017457 [exp] 670 / 0 AT5G04420 610 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10029902 [exp] 462 / 6e-157 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10004499 [exp] 444 / 2e-149 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10015176 [exp] 420 / 1e-140 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031497 [exp] 419 / 6e-140 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10034163 [exp] 203 / 9e-58 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10043420 [exp] 188 / 7e-52 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif CL0186 [poplar] [flax] Beta_propeller PF13415 [poplar] [flax] Kelch_3 Galactose oxidase, central domain CL0186 [poplar] [flax] Beta_propeller PF13418 [poplar] [flax] Kelch_4 Galactose oxidase, central domain
Representative CDS sequence Show only first row Show all	>Potri.010G230300.2 pacid=42798890 polypeptide=Potri.010G230300.2.p locus=Potri.010G230300 ID=Potri.010G230300.2.v4.1 annot-version=v4.1 ATGGGAACAGAGGAGTTTAAGAAGGAAATGGAAGTGGCCAATTGGTTTTCGCAATTGCCTTATGAACAGTGGGTCCCAATCCCTGTCTCCGGCACACGAC CTTCAGCTCGGTACAAGCATGCTGCAGGAGTTGCTGACGAGAAATTGTATATTGCGGGTGGGAGTCGTACTGGTCGGTATCTACCTGATGTTCAGGTTTT TGATTTTAGAGGTTTGGTGTGGTCTAGTTTGAAACTTAAAAGTGAGGCGGATGGTGGAAAAAGTGAAGAGAATGGCGCACAGGAAGTTCTCCCGGCCACT TCAGATCATAGTATGGTTAAGTGGGGGAACAAACTTCTTCTCCTTGGGGGGCATTCGAAGACAACTTCCGATAGTATGACAGTGAGGTTCATTGATCTGG AAACACATGCCTGTGGTTTTATTGAGACTTCAGGAAATGCTCCGGTAGCCCGTGGGGGGCATTCTGTTACACTGGTTGGTTCTAGACTGATAATTTTTGG CGGAGAAGATAGGAACAGGAGATTGCTGAATGATGTGTATGCCCTTGACTTGGAAACAATGACTTGGGATGTGGTAGTGGCGAGGCAGACACCTCCAGCT CCCAGATTTGATCACACAGCTGCAATTAACAGGGAACACTACCTTCTAATCTTTGGTGGCTGTTCTCATTCAATCTTCTTCAATGATCTTCATGTACTCG ACTTACAAACTATGGAGTGGTCCCAGCCTGAAGTTCAAGGTGATTTGGTCACTCCTAGGGCTGGTCATGCTGGTGTAACCATTGGTGAGAACTGGTATAT TGTTGGTGGTGGAGATAACAAAAATGGTTGCCCAGAAACCCTCGTGTTAAATATGTCTAAGCTAACTTGGTCAGCATTGACAAGTGTAAAGGAAAGAGAT CCACTTGCTAGTGAGGGACTTAGTGTTTGCTCAGCATTAATCAACGGAGAGAGGCATTTGGTTGCCTTTGGTGGCTATAATGGGAAATACAATAACGAGG TTTTTGTTATGAGACTTAAACCAAGTGATGTATCACGTCCAAAGATTTTTCAGTCACCAGCAGCAGCAGCAGCTGCAGCTTCTGTTACTGCTGCATACGC TTTAGCCAAATCTGAAAAGTTAGATTTCTCCAGCTTAAATCTGAACTCTAATGGAGTTGGAAACAATCCTTCTGAACTAGATTTAGCATTTGAAATTGAT GCACTTAAAGAAGAGAAAAAGGAGCTGGAATTGTTCCTCACCGAAGTCAGAGCAGAAAATTCTAGGCTTACAGAAAAGGTTGATGAAGTTAATGGTACTC ATGCAGAACTGTCCAAGGAACTCCATTCTGTTCAAGGTCAACTAGCTGCTGAGAGATCAAGATGCTTTAAACTTGAGGCTCAAATTGCTGAGTTACAGAA GATACTGGAATCATTGCAGTCCATAGAGAATGAAGTACAACTACTTCGAAGACAGAAATCTGCACTGGAGCAGGAGATAGAGCGTAGTGCAGCTCAAAGA CAAGGTTCTGGAGGTGTCTGGCGCTGGATAGCTGGCTAA
AA sequence Show only first row Show all	>Potri.010G230300.2 pacid=42798890 polypeptide=Potri.010G230300.2.p locus=Potri.010G230300 ID=Potri.010G230300.2.v4.1 annot-version=v4.1 MGTEEFKKEMEVANWFSQLPYEQWVPIPVSGTRPSARYKHAAGVADEKLYIAGGSRTGRYLPDVQVFDFRGLVWSSLKLKSEADGGKSEENGAQEVLPAT SDHSMVKWGNKLLLLGGHSKTTSDSMTVRFIDLETHACGFIETSGNAPVARGGHSVTLVGSRLIIFGGEDRNRRLLNDVYALDLETMTWDVVVARQTPPA PRFDHTAAINREHYLLIFGGCSHSIFFNDLHVLDLQTMEWSQPEVQGDLVTPRAGHAGVTIGENWYIVGGGDNKNGCPETLVLNMSKLTWSALTSVKERD PLASEGLSVCSALINGERHLVAFGGYNGKYNNEVFVMRLKPSDVSRPKIFQSPAAAAAAASVTAAYALAKSEKLDFSSLNLNSNGVGNNPSELDLAFEID ALKEEKKELELFLTEVRAENSRLTEKVDEVNGTHAELSKELHSVQGQLAAERSRCFKLEAQIAELQKILESLQSIENEVQLLRRQKSALEQEIERSAAQR QGSGGVWRWIAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04420			Galactose oxidase/kelch repeat...		Potri.010G230300 [exp]	0	1
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.009G115100 [exp]	2.64	0.9273
AT3G27325			hydrolases, acting on ester bo...		Potri.001G338000 [exp]	2.82	0.9344
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Potri.010G254200 [exp]	3.00	0.9309
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.010G159400 [exp]	3.60	0.9439
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Potri.001G214800 [exp]	4.89	0.9145
AT5G11800		ATKEA6, KEA6	K+ efflux antiporter 6, ARABID...		Potri.006G230400 [exp]	5.47	0.9210	Pt-ATKEA4.3
AT1G09160			Protein phosphatase 2C family ...		Potri.005G021200 [exp]	5.74	0.9155
AT4G17910			transferases, transferring acy...		Potri.003G093300 [exp]	5.74	0.9008
AT2G42320			nucleolar protein gar2-related...		Potri.006G056800 [exp]	8.48	0.8986
AT5G22050			Protein kinase superfamily pro...		Potri.001G215000 [exp]	11.74	0.9065

Compare expression of checked genes

Potri.010G230300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.