Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04430 405 / 9e-143 BTR1S, BTR1L, BTR1 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) AT2G25970 51 / 5e-07 KH domain-containing protein (.1) AT4G10070 48 / 7e-06 KH domain-containing protein (.1) AT5G15270 46 / 2e-05 RNA-binding KH domain-containing protein (.1.2) AT1G33680 45 / 5e-05 KH domain-containing protein (.1) AT3G04610 44 / 8e-05 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT1G14170 42 / 0.0003 RNA-binding KH domain-containing protein (.1.2.3) AT5G46190 42 / 0.0004 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G030700 [exp] 481 / 1e-172 AT5G04430 406 / 1e-142 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.017G085500 [exp] 55 / 3e-08 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.019G072500 [exp] 50 / 1e-06 AT4G10070 370 / 2e-117 KH domain-containing protein (.1) Potri.002G112200 [exp] 48 / 7e-06 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 47 / 9e-06 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.006G231800 [exp] 47 / 1e-05 AT2G25970 393 / 5e-128 KH domain-containing protein (.1) Potri.018G055300 [exp] 47 / 1e-05 AT2G25970 319 / 9e-100 KH domain-containing protein (.1) Potri.013G099800 [exp] 47 / 1e-05 AT4G10070 303 / 5e-92 KH domain-containing protein (.1) Potri.005G056100 [exp] 45 / 5e-05 AT3G04610 566 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037932 [exp] 434 / 5e-154 AT5G04430 449 / 4e-160 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Lus10038665 [exp] 416 / 1e-146 AT5G04430 447 / 2e-159 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Lus10005530 [exp] 50 / 2e-06 AT3G04610 593 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Lus10006565 [exp] 50 / 2e-06 AT3G04610 596 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Lus10020998 [exp] 49 / 4e-06 AT2G25970 253 / 2e-76 KH domain-containing protein (.1) Lus10004445 [exp] 48 / 4e-06 AT2G25970 309 / 3e-100 KH domain-containing protein (.1) Lus10023854 [exp] 48 / 7e-06 AT2G25970 245 / 1e-73 KH domain-containing protein (.1) Lus10034831 [exp] 47 / 2e-05 AT1G51580 409 / 2e-134 RNA-binding KH domain-containing protein (.1) Lus10003519 [exp] 46 / 3e-05 AT4G10070 399 / 4e-128 KH domain-containing protein (.1) Lus10002947 [exp] 45 / 4e-05 AT4G10070 426 / 1e-138 KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.010G230500.2 pacid=42797363 polypeptide=Potri.010G230500.2.p locus=Potri.010G230500 ID=Potri.010G230500.2.v4.1 annot-version=v4.1 ATGGAATCGACGGAGTCGTCTTACGTCTCATCACCGGAGCAACCGCAGAAGAGATCTCCTCCACCGCCTGCATCGCCGCCTTCAGATTCAGAAGAGAAGC CGACTTATACCAGGTTTCTCGTGTCAAATGCGGCAGCTGGTTCTGTGATTGGAAAGGGTGGTGCAACAATTACTGATTTTCAGTCACAATCTGGAGCGAG AATTCAGTTGTCGAGAAATTATGAGTTTTTTCCGGGAACATCTGATAGGATAATTATGGTATCTGGAGGAATTGATGATGTGTTGAAGGCCGTGGAACTT ATAATTGCTAAATTGCTCAGTGAGATTCCCGCTGAAGATGGAGATGAAGCTGAACCAAGAATGAGAGTGAGATTGGTTGTTCCAAATAGTGCTTGTGGTA GCATTATTGGGAAAGGAGGGTCCATTATAAAGTCATTTATTGAAGAGTCCCATGCTGGCATCAAGATTTCTCCTCTGGATACCAAATTTTTTGGATTGAC TGATAGGCTGGTTACAGTAACAGGAACTCTAGAGGAGCAAATGCATGCCATTGATTTAATTTTGTCTAAGCTAACCGATGATCCTCATTACTCGCAGACT ATGCATGCTCCATTTTCATATGCAGCAGCGTACAATTCAATGAACCATGGGCCGAATGGGGCTGCAGTAAAGTTTCAGCATAACAAGGATGATATTACCA ATTCTGTGACCATTGGTGTTGCTGATGAGCATATTGGATTGGTTGTTGGTCGTGGAGGAAGAAATATAATGGAAATTAGCCAGACTAGTGGAGCCAGGCT AAAAATATCTGACAGAGGTGATTTCATGTCTGGAACAACTGATAGGAAAATTACAATCACCGGATCACAGAGGGCCATCCGTGCTGCTGAGGACATGATA ATGCAGAAGGTATCCTATGCTTCTGAGAGGGAGACAGATTAG
AA sequence Show only first row Show all	>Potri.010G230500.2 pacid=42797363 polypeptide=Potri.010G230500.2.p locus=Potri.010G230500 ID=Potri.010G230500.2.v4.1 annot-version=v4.1 MESTESSYVSSPEQPQKRSPPPPASPPSDSEEKPTYTRFLVSNAAAGSVIGKGGATITDFQSQSGARIQLSRNYEFFPGTSDRIIMVSGGIDDVLKAVEL IIAKLLSEIPAEDGDEAEPRMRVRLVVPNSACGSIIGKGGSIIKSFIEESHAGIKISPLDTKFFGLTDRLVTVTGTLEEQMHAIDLILSKLTDDPHYSQT MHAPFSYAAAYNSMNHGPNGAAVKFQHNKDDITNSVTIGVADEHIGLVVGRGGRNIMEISQTSGARLKISDRGDFMSGTTDRKITITGSQRAIRAAEDMI MQKVSYASERETD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Potri.010G230500 [exp]	0	1
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Potri.008G065300 [exp]	1.00	0.8777
AT1G14000		VIK	VH1-interacting kinase (.1)		Potri.010G164500 [exp]	2.44	0.7929
AT5G09570			Cox19-like CHCH family protein...		Potri.001G282900 [exp]	3.74	0.8075
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.010G164200 [exp]	4.58	0.7898	ATS9.1
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.002G252600 [exp]	5.29	0.8005	Pt-RPT2.2
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Potri.004G066000 [exp]	6.00	0.8040	Pt-PBB1.2
AT1G65700			Small nuclear ribonucleoprotei...		Potri.001G278000 [exp]	6.00	0.7684
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Potri.008G056300 [exp]	7.48	0.7791	CTIMC.1
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Potri.003G044700 [exp]	8.71	0.7215
AT1G30890			Integral membrane HRF1 family ...		Potri.007G129900 [exp]	8.77	0.7587

Compare expression of checked genes

Potri.010G230500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.