Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36690 475 / 1e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G60290 298 / 6e-99 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 297 / 1e-98 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 253 / 1e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 251 / 1e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 225 / 8e-71 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G07480 221 / 5e-69 KUOX1 KAR-UP oxidoreductase 1 (.1) AT2G38240 219 / 3e-68 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G13610 204 / 1e-62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 204 / 2e-62 ATJRG21 jasmonate-regulated gene 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029700 [exp] 665 / 0 AT2G36690 478 / 1e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G080600 [exp] 259 / 4e-84 AT5G07480 453 / 9e-161 KAR-UP oxidoreductase 1 (.1) Potri.001G451900 [exp] 258 / 2e-83 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 256 / 8e-83 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048700 [exp] 250 / 5e-80 AT2G36690 255 / 3e-82 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 249 / 6e-80 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G002800 [exp] 249 / 6e-80 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451600 [exp] 249 / 8e-80 AT4G10500 406 / 5e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048900 [exp] 248 / 3e-79 AT2G36690 250 / 5e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014398 [exp] 462 / 6e-163 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023890 [exp] 461 / 8e-163 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 256 / 8e-83 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032502 [exp] 242 / 5e-77 AT5G07480 396 / 3e-138 KAR-UP oxidoreductase 1 (.1) Lus10032930 [exp] 240 / 2e-76 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 236 / 4e-75 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004808 [exp] 211 / 3e-65 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030995 [exp] 208 / 8e-64 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10005037 [exp] 206 / 7e-63 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10024882 [exp] 203 / 2e-62 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.010G231500.1 pacid=42798104 polypeptide=Potri.010G231500.1.p locus=Potri.010G231500 ID=Potri.010G231500.1.v4.1 annot-version=v4.1 ATGTCACCGGCATTGGTCTTGGAAGTTCAAACCATTTGCAAAGAAGACGAGCTAGTAGAAAGTCATAAGTACCATAAAGGAGTGAAACATCTATGTGAGA GAGGGTTGACAAAAGTGCCTAGAAAATACATATTGCCGGCTTTGGAACGTCCTCTGTTATCGAAAAAAGATGGCGCTACTAATCTCAAGTTGCCTATAAT CGATCTTGCTCAGCTGCAAGGTCCGGATAGAATTCATGCCCTCGAATCCCTTTCAAAAGCTTGTGAAGAATATGGTTTTTTTCAGTTGATAAATCATGGC ATTGCAAGTGAATCCGTTCTCGAAATGATTCAAGCAGCTAGGAAATTCTTCGAGCTTCCTTTCGAGGAGAGATCGAAGTACATGTCGAAAGATCAGAGTG CACCAGTTAGATATGGAACAAGTTTTAATCAGAACAAAGATAGGGTGTTTTGCTGGAGAGACTTTATAAAGCTTAATTGCCATCCCCTCTCAGATGTTCT TCCTTTTTGGCCTTCTTCTCCTGCCGAGCTAAGGCAAGCGGTGGTTAACTACTCGAAAGGAACAAAATCCTTGTATCTAATGCTTGCGAAAGCAATATTA GAGAGCTTAGGATTGGTTGAAACAGAAAAAAATATCGATGAAAGTGATAGCTGTGATCTCTTAAAGGAATTTGAGGATGGGAGCCAACTCATTGTGGCTA ATTGCTACCCTTCATGTCCTGAACCAGACCTGACACTTGGCATGCCACCCCATTCAGACTATGGATTCCTTACTCTACTTCTCCCAGATGAAGAAGTTAA GGGTCTGCAAATTCAGCATGAAGGGAGATGGGTCACTGTGGAACCAATTCCCAATTCATTTGTTGTTAATGTTGGTGATCATCTTGAGATTTTTAGCAAT GGGAAGTACAGGAGTGTACTCCATAGAGTTCTAGTCAATCCTTCGAAGTCTCGAATCTCCATTGCCTCGTTACACAGTTTACCTTTCAACAGCATGATTC GTCCATCGCCAAAACTCGTCAATGATGCTAATCCAAGGCGGTATAAGGATACAGACTTTGCGACTTTTATTCAATACATGGCATCTCATGAACACAAGAA CAAGAACTTCCTGGAGTCCAGGAGATTGTCTCAGCTAGGCGATGCATGA
AA sequence Show only first row Show all	>Potri.010G231500.1 pacid=42798104 polypeptide=Potri.010G231500.1.p locus=Potri.010G231500 ID=Potri.010G231500.1.v4.1 annot-version=v4.1 MSPALVLEVQTICKEDELVESHKYHKGVKHLCERGLTKVPRKYILPALERPLLSKKDGATNLKLPIIDLAQLQGPDRIHALESLSKACEEYGFFQLINHG IASESVLEMIQAARKFFELPFEERSKYMSKDQSAPVRYGTSFNQNKDRVFCWRDFIKLNCHPLSDVLPFWPSSPAELRQAVVNYSKGTKSLYLMLAKAIL ESLGLVETEKNIDESDSCDLLKEFEDGSQLIVANCYPSCPEPDLTLGMPPHSDYGFLTLLLPDEEVKGLQIQHEGRWVTVEPIPNSFVVNVGDHLEIFSN GKYRSVLHRVLVNPSKSRISIASLHSLPFNSMIRPSPKLVNDANPRRYKDTDFATFIQYMASHEHKNKNFLESRRLSQLGDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.010G231500 [exp]	0	1
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.009G169900 [exp]	2.44	0.9391
AT3G06240			F-box family protein (.1)		Potri.017G058000 [exp]	2.64	0.8948
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.005G143900 [exp]	3.46	0.9070	IFS1.45,CYP81S8
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.010G220500 [exp]	4.24	0.9280
AT4G35160			O-methyltransferase family pro...		Potri.004G050400 [exp]	5.19	0.9132	FOMT2,Pt-OOMT2.13
AT5G42250			Zinc-binding alcohol dehydroge...		Potri.002G013400 [exp]	6.48	0.8761
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134601 [exp]	7.41	0.9046
AT1G27100			Actin cross-linking protein (....		Potri.004G130200 [exp]	8.94	0.8902
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013100 [exp]	10.67	0.9012
AT2G23770			protein kinase family protein ...		Potri.010G078700 [exp]	13.85	0.8810

Compare expression of checked genes

Potri.010G231500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.