Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02420 44 / 1e-06 unknown protein AT5G04470 44 / 2e-06 SIM SIAMESE, cyclin-dependent protein kinase inhibitors (.1) AT3G10525 42 / 1e-05 LGO, SMR1 SIAMESE RELATED 1, LOSS OF GIANT CELLS FROM ORGANS (.1) AT3G20898 41 / 1e-05 unknown protein AT3G20900 40 / 1e-05 unknown protein AT5G40460 37 / 0.0005 unknown protein AT1G51355 37 / 0.0009 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029600 [exp] 185 / 5e-62 AT5G02420 48 / 5e-08 unknown protein Potri.010G231700 [exp] 81 / 4e-21 AT5G04470 / SIAMESE, cyclin-dependent protein kinase inhibitors (.1) Potri.009G003400 [exp] 76 / 1e-18 AT5G02420 45 / 7e-07 unknown protein Potri.001G212300 [exp] 73 / 1e-17 AT5G02420 43 / 8e-06 unknown protein Potri.016G053900 [exp] 46 / 2e-07 AT3G20898 68 / 5e-16 unknown protein Potri.006G053600 [exp] 45 / 6e-07 AT3G20898 67 / 1e-15 unknown protein Potri.001G239000 [exp] 44 / 3e-06 AT5G02420 59 / 1e-11 unknown protein Potri.014G090000 [exp] 42 / 8e-06 ND / Potri.010G045200 [exp] 41 / 2e-05 AT1G10690 92 / 2e-25 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037925 [exp] 100 / 4e-28 AT5G02420 47 / 2e-07 unknown protein Lus10038653 [exp] 94 / 1e-25 AT5G02420 47 / 2e-07 unknown protein Lus10017454 [exp] 54 / 4e-10 ND 38 / 3e-04 Lus10016559 [exp] 50 / 2e-08 AT2G37610 39 / 2e-04 unknown protein Lus10040827 [exp] 50 / 3e-08 AT3G20898 44 / 8e-06 unknown protein Lus10004622 [exp] 38 / 0.0002 AT1G60783 51 / 9e-10 unknown protein Lus10026693 [exp] 37 / 0.0008 AT1G60783 47 / 5e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G231600.1 pacid=42799154 polypeptide=Potri.010G231600.1.p locus=Potri.010G231600 ID=Potri.010G231600.1.v4.1 annot-version=v4.1 ATGTCTACGGATCTTGAATTACTCCATGATCTGCCAAGAATTCAAGTTCGGCCTGCAATCAAGATTGAGACCCTACAATCTTGTAGTGCTACGGATGGCA ATAAAGCCATAATTCAGCAAGAAAACAGCGAAACTGATGACGACTGTCAAACGCCGAAATCTGAAGAGCACAAGATTCCTGCCGTTTTAAGCTGCCCGCC GGCGCCACGAAAAGCAAAGAGGAATATTTCATGCAAAAGAAAGCTGACAGAAATCGACTTCTTTGAGATCGTGAACGGTGAAGAAGTAGATTCGTTTTTT CAATCAAGTTTTGAGCTTCTTACAAAGAGAAGGTGCCCTTGTATATGA
AA sequence Show only first row Show all	>Potri.010G231600.1 pacid=42799154 polypeptide=Potri.010G231600.1.p locus=Potri.010G231600 ID=Potri.010G231600.1.v4.1 annot-version=v4.1 MSTDLELLHDLPRIQVRPAIKIETLQSCSATDGNKAIIQQENSETDDDCQTPKSEEHKIPAVLSCPPAPRKAKRNISCKRKLTEIDFFEIVNGEEVDSFF QSSFELLTKRRCPCI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02420			unknown protein		Potri.010G231600 [exp]	0	1
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Potri.010G100200 [exp]	1.00	0.8234	NTR1.3
AT5G16880			Target of Myb protein 1 (.1.2....		Potri.019G050000 [exp]	4.69	0.6925
AT4G09830			Uncharacterised conserved prot...		Potri.002G064800 [exp]	8.00	0.6952
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Potri.012G117800 [exp]	8.36	0.6825	ARA7.1
AT3G02360			6-phosphogluconate dehydrogena...		Potri.017G106900 [exp]	10.90	0.6992	GND.2
AT4G00355		ATI2	ATG8-interacting protein 2, un...		Potri.014G086000 [exp]	14.42	0.6792
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.010G209400 [exp]	17.88	0.6933
AT3G10640		VPS60.1	SNF7 family protein (.1.2)		Potri.008G018300 [exp]	18.49	0.6700
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Potri.004G101700 [exp]	19.00	0.6700
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G071900 [exp]	26.73	0.6910

Compare expression of checked genes

Potri.010G231600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.