Plant FIBer expression Database

Potri.010G231900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52170 138 / 1e-35 DNA binding (.1.2)
AT5G58210 62 / 5e-10 hydroxyproline-rich glycoprotein family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G029500
[exp]
521 / 0 AT3G52170 128 / 3e-32 DNA binding (.1.2)
Potri.018G151900
[exp]
51 / 7e-07 AT5G58210 89 / 4e-20 hydroxyproline-rich glycoprotein family protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017453
[exp]
180 / 2e-50 AT3G52170 133 / 2e-33 DNA binding (.1.2)
Lus10028828
[exp]
175 / 5e-47 AT3G52170 131 / 8e-32 DNA binding (.1.2)
PFAM info
Representative CDS sequence
>Potri.010G231900.2 pacid=42800107 polypeptide=Potri.010G231900.2.p locus=Potri.010G231900 ID=Potri.010G231900.2.v4.1 annot-version=v4.1
ATGCATGCCATAAAGGGTGGCTGGGTTGGCCAAACATTTGCCTTAGCTAAGTCCATTGATTCTGGAGGGAAGAAGTCACGGATTCGGCGCTCAAAGGAGG
AGAGGAAGGGAATGGTCGAGTCCTTTATAAAGAAGTACCAGAGTTTAAACAATGGGAATTTTCCTTCTCTTAATCTCACACATAAGGAAGTTGGTGGGTC
CTTTTACACTGTTCGGGAGATTGTTCGGGAGATAATCCAAGAAAATAGAGTTCTTGGTCCTGGCAAGTTGCCACTGGAGGAGCAGTACAATGATCTGTTT
GTGGAGCAGTACCCGTTGGGTACAATTTCAACAGAACCTCAAACTTCTCTGTCCATATCTCCAAATGGAAGTCCTGAACATGATCAGCATGAGAGCTCAG
GTGAAGCGCTGGATTTAATTTCTGAGCAACATGCTGAACCTGAACAGCAGGGATTCAATAATGGGAAAATCATTAACGGGAGTCATGTAATTGTAAAGAA
TGAAGAAGCTGATAAACCAAAAGTTGTGGAGGTTCAAGTTACCGAACCTCTGGAAACAGAGAAGAGAATGGAAGAAGTGGCAGCATCTAGGGCTAAAGTA
ACTCAAATGGCTGATGTAATGGTAGAGACATTCCCATTGCCACCTGCTACCAAATCAGCTGGAAACTCGAATGGAAATTCCAGTAATGTAAGGGAGGTAA
ATGGGATTTTAGAAGAGAAAGATGTTGAAAAGGTGCTCTTGGAGCCGGAACAGGACCCAGAAAATAAATCAGCTGGAAACTTGAATGGAAATTCCAGTAA
TGTAAGGGAGGTAAATGGGATTTTAGAAGAGAAAGATGTTGAAAAGGTGCTCTTGGAGCCAGAACAGGACCCAGAAAATGGCATTTCTTTGCCAGACGGA
ATGAGTTCCTTGCATAATAGCAGTTTGGTAGATGACAATGAAGTTTCCTTGCATGGTAGCAGTTTGGTAGATGACAAAGAAGTGGAAAAGCCAGCAGTTC
CATTGTTGGAACGAAGCTCTGATTTGGCATGTGAGAAAGCAGTGGAAAACCTTGTAGTTTTGGCAATGGGAAGCTCAAACGCATCTGTCACCGACGAAGG
CATTGTGCAGGATGCTGAGGCAGACATAGATGTGAAGGTGAAGTCATCACATGATGAGAAGGCAATTGCTGAAACTAAGGTTATTGACGCTCAAAATGGC
ATCCAAGCAAAATCTTCAACTGTTGGTAGTCAGTCAATAGCCAAGGAGGTTGAGATGAAAGATGAAGCTTCCTTTCAACATAGTCAGGACTCGCAGAAAC
AAAGCAGTCCAACATTAAACAGAATTAATCTGGAATCGTGGGGAGGAGGGGCATCTAAGAATCGACCAGAACCAGAAACCAACCCGCTTTTGGCCATTTT
TAAATCATTCCTAGCTGCCTTGGTGAAATTTTGGTCAGAATAA
AA sequence
>Potri.010G231900.2 pacid=42800107 polypeptide=Potri.010G231900.2.p locus=Potri.010G231900 ID=Potri.010G231900.2.v4.1 annot-version=v4.1
MHAIKGGWVGQTFALAKSIDSGGKKSRIRRSKEERKGMVESFIKKYQSLNNGNFPSLNLTHKEVGGSFYTVREIVREIIQENRVLGPGKLPLEEQYNDLF
VEQYPLGTISTEPQTSLSISPNGSPEHDQHESSGEALDLISEQHAEPEQQGFNNGKIINGSHVIVKNEEADKPKVVEVQVTEPLETEKRMEEVAASRAKV
TQMADVMVETFPLPPATKSAGNSNGNSSNVREVNGILEEKDVEKVLLEPEQDPENKSAGNLNGNSSNVREVNGILEEKDVEKVLLEPEQDPENGISLPDG
MSSLHNSSLVDDNEVSLHGSSLVDDKEVEKPAVPLLERSSDLACEKAVENLVVLAMGSSNASVTDEGIVQDAEADIDVKVKSSHDEKAIAETKVIDAQNG
IQAKSSTVGSQSIAKEVEMKDEASFQHSQDSQKQSSPTLNRINLESWGGGASKNRPEPETNPLLAIFKSFLAALVKFWSE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G52170 DNA binding (.1.2) Potri.010G231900
[exp]
0 1
AT1G32580 plastid developmental protein ... Potri.010G068300
[exp]
3.60 0.9658
AT1G63680 APG13, ATMURE, ... PIGMENT DEFECTIVE EMBRYO 316, ... Potri.001G103300
[exp]
5.09 0.9594 Pt-PDE316.1
AT1G72040 P-loop containing nucleoside t... Potri.013G109400
[exp]
6.08 0.9406
AT5G08540 unknown protein Potri.010G254800
[exp]
7.74 0.9537
AT5G15390 tRNA/rRNA methyltransferase (S... Potri.004G122300
[exp]
9.21 0.9539
AT3G02660 EMB2768 EMBRYO DEFECTIVE 2768, Tyrosyl... Potri.014G140400
[exp]
9.94 0.9580
AT3G22150 Tetratricopeptide repeat (TPR)... Potri.006G007800
[exp]
11.40 0.9519
AT5G59500 protein C-terminal S-isoprenyl... Potri.009G033700
[exp]
12.00 0.9466
AT3G54090 FLN1 fructokinase-like 1 (.1) Potri.016G109600
[exp]
12.96 0.9559
AT1G15510 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS E... Potri.003G058700
[exp]
17.74 0.9456

Potri.010G231900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.