Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04480 1229 / 0 UDP-Glycosyltransferase superfamily protein (.1.2) AT4G01210 646 / 0 glycosyl transferase family 1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029400 [exp] 1680 / 0 AT5G04480 1237 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G092500 [exp] 701 / 0 AT4G01210 1237 / 0.0 glycosyl transferase family 1 protein (.1) Potri.002G166100 [exp] 693 / 0 AT4G01210 1168 / 0.0 glycosyl transferase family 1 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028829 [exp] 1323 / 0 AT5G04480 1216 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10017452 [exp] 1306 / 0 AT5G04480 1202 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10002154 [exp] 715 / 0 AT4G01210 1268 / 0.0 glycosyl transferase family 1 protein (.1) Lus10008732 [exp] 709 / 0 AT4G01210 1264 / 0.0 glycosyl transferase family 1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Potri.010G232000.2 pacid=42798864 polypeptide=Potri.010G232000.2.p locus=Potri.010G232000 ID=Potri.010G232000.2.v4.1 annot-version=v4.1 ATGAACCGAAACCACCACAATCCGTCCGAACTCCCAGACTCCCCCGCCACCAATACCGGTTCCGAAGGTGTTTCCGATCAAAATTTCCACTCGATCAGCG ACCGTTTTCTTTTCAAACGAAACCCTAACCCTAGCACTAATAGTCCACATAAATCAAGCAAATCACCTCCGGATCGGTTGCGCCGATGGCATCACTACAC AAACAAAAGCAACAACCGCAAGGGCGGGTGGTTCTCGTGTATTCCATTTCGCGGCATTTGTTTGTTCTACTTCGTGATATTTCTCGCTGTTTTCGCTTTC GTTTTGGCGTCTATTTTGCTGCAGAGTTCGATTACCGGTATGGTTGTGTTTAGTAAAGGGTGGATCGATCATCGGAGATCGATTAGAGAAGGTTTGAAGT CAGGCACTACATTGAAATTCGTGCCCGGTTTAAGATCACGGTTGCTTTTGGAAGGTCATGGGCTTGATCATGCTAGAGTGCTGGCTAATAGAGTTGGCCT CCGCCCTCCCAGACTCGCCGTTATCTTAGGAAACATGAAGAAAGATCCACAGTCATTGATGTTGCTTAGTGTGATGAAGAATCTGCGGAAACTTGGTTAT GCACTTAAGATATATGCTTTGGGGAATGGTGAAACAAGAACAATGTGGGAGGATATAGGAGGCCAGATATCAGTTTTAAGACCAAAGCAATATGACCTTA TTGATTGGTCCATTTTTGAAGGTGTTATGGTCGATTCTCTTGAAGCCAAAGAGGTAGTTTCGAGCCTCTCACAGGAGCCATTTCAGTCAATACCACTTGT ATGGATAATCCAAGAAGATACCCTTGCAAATCGTCTTCCATTGTATCAGGATATGAACTTGCAGCATTTGGTGTCTCATTGGAGAAGTACCTTTAACAGG GCTAATGTTGTTGTATTTCCAGACTTCGCTTTGCCAATGTTATATAGTGTGCTTGACACTGGAAACTTCTTTGTGATTCCTGGATCACCAGTAGATGTGT GGGATGCTGAAAGCTACAGTAAAACCCATGCTAAGCATCAGCTAAGGGTGGACCATGGATTCAGCGAAGATGATTTGGTGGTTCTAGTTGTCGGGAGTTC TTTCTTCTATGATGAGCTATCATGGGACTACACCGTGGCACTGCATACTCTAGGACCTGTACTAGCCGAATATGCAAGGAGCAAAGATGCTGAAGGATCA TTTAAATTTGTTTTCTTATGTGGTAATTCCACCGATGATGATGCTTTCCAGGAAATTGTTTCTCGTGTGGGACTTCATCCTAGCTCTGTGCGGCATTATG GCCTGAATGGTGATGCCAACAGTGTGTTATTAGCGGCAGATATTGTTCTTTATGGTTCTTCCCAAGATGAACAGGGTTTTCCTCCGGTGCTCATCCGAGC CATGACCTTTGGAATCCCAGTCATCGCACCTGATATTCCAACCATGAAAAAATATGTTAGTGATGAAGCCCATGGGATATTTTTCTCAAAATATAACCCT GAAGCATTGACGAGGGCTTTCTCTCTTTTGATATCGAACGGGAAACTTTCTAAATTTGCTGAAACAGTTGCTTTCTCTGGAAGACTGCTTGCTAAGAACA TGCTTGCATCAGAATGTATAACAGGTTATGCAAGGCTTTTGGAGAATATGCTTAGTTTTCCATCAGATACCTTGTTGCCTGGTCCTGTGTCTAAGCTTGA ACAGAGGGAATGGGAATGGAACTTGTTTAACAAGGAACTAGAACAGGAAACTGATGATTTGTCAGGCATGTATGAGAGCCTTTTTTCTTCCAGAGAAACC AGTATTGTTTATTCCCTTGAGAAAGAATGGAGCAATCTTGTTAATTCAACTATCATCTCTGAGAATGGAACGGAAATTCTAGTACCAGATACCCCGACAG AATCAGATTGGGATGTTTTGATGGAAATAGAGAGCTTTGAAGAACATGAGAGGGTGGTTAAAGAGGAGCTTGAAGAAAGAATGGATAAAACTCGTGGTCT GTGGGATGATATATATCGCAGTGCTCGAAAATCTGAAAAGCTCAAGTTTGAAAGCAATGAAAGGGATGAAGGAGAGCTAGAAAGGACAGGCCAGCCAGTA TGCATTTATGAGATATATGATGGAGCTGGGGCCTGGCCACTTTTGCACCATGGATCCTTATACCGTGGCTTAAGTCTTTCTACAAAAGCACGGAGGTCAA GATCAGATGACGTGGATGCAGTTGCCCGGCTTCCCCTCCTGAACGAAAGCTACTATCAGAATATATTATGCGAAATAGGAGGAATGTTTTCTATTGCAAT TAGGGTGGATGCCATTCACAAGAGACCTTGGATTGGGTTTCAATCATGGCATGCTGCTGGTAGGAAGGTTTCATTATCATTTAAAGCTGAAAAAGTTCTA GAAGAAAAGACACAAGAAGAAAATAAAGATGTAATGTACTTCTGGGCTCGCTTGGGCATGGATGGTGGAGTTACTGGAAGCAATGAGGAACTCACTTTCT GGTCCATGTGCGACGTCTTAAACGGAGGACGCTGCAGAACTGCTTTTGAAGATGCCTTCCGCCAGATGTATGACTTGCCATCATATCTTGAAGCTCTTCC TCCAATGCCAGAAGATGGAGGTCACTGGTCTGCCCTGCATAGCTGGGTCATGCCAACCCCTTCCTTTCTGGAGTTCATTATGTTTTCACGAATGTTTGTT GATTCTCTTGATGCTCTGCAATCCAACTCTAGCCAAGTGAACAAGTGTTTGTTGAGTTCCACTGAGCTCGAGGAAAAGCATTGTTATTGTCGGATAATGG AAGTCCTTGTTAATGTTTGGGCTTATCATAGTGCACGAAGGATGGTTTACATTGATCCACACACTGGTTCTGTAGAAGAGCAGCACCCGATTAAGCAAAG AAAGGAAATTGCGTGGAAAAAGTATTTTAACCTTACAGTATTGAAGAGTATGGACGAAGATCTTGCAGAGGCAGCGGATGATGGAGATCATCCAAGGGAG AGGTGGCTATGGCCACTAACAGGAGAAGTGCATTGGCAAGGGATTTATGAAAGGGAGAGGGAAGAAAGATACAGGATAAAAATGGACAAGAAGAGGAAAA CAAGAGAGAAACTAGTTGAAAGGTTGAAGGCTGGATACAAACAGAAACCACTTGGGGGATAA
AA sequence Show only first row Show all	>Potri.010G232000.2 pacid=42798864 polypeptide=Potri.010G232000.2.p locus=Potri.010G232000 ID=Potri.010G232000.2.v4.1 annot-version=v4.1 MNRNHHNPSELPDSPATNTGSEGVSDQNFHSISDRFLFKRNPNPSTNSPHKSSKSPPDRLRRWHHYTNKSNNRKGGWFSCIPFRGICLFYFVIFLAVFAF VLASILLQSSITGMVVFSKGWIDHRRSIREGLKSGTTLKFVPGLRSRLLLEGHGLDHARVLANRVGLRPPRLAVILGNMKKDPQSLMLLSVMKNLRKLGY ALKIYALGNGETRTMWEDIGGQISVLRPKQYDLIDWSIFEGVMVDSLEAKEVVSSLSQEPFQSIPLVWIIQEDTLANRLPLYQDMNLQHLVSHWRSTFNR ANVVVFPDFALPMLYSVLDTGNFFVIPGSPVDVWDAESYSKTHAKHQLRVDHGFSEDDLVVLVVGSSFFYDELSWDYTVALHTLGPVLAEYARSKDAEGS FKFVFLCGNSTDDDAFQEIVSRVGLHPSSVRHYGLNGDANSVLLAADIVLYGSSQDEQGFPPVLIRAMTFGIPVIAPDIPTMKKYVSDEAHGIFFSKYNP EALTRAFSLLISNGKLSKFAETVAFSGRLLAKNMLASECITGYARLLENMLSFPSDTLLPGPVSKLEQREWEWNLFNKELEQETDDLSGMYESLFSSRET SIVYSLEKEWSNLVNSTIISENGTEILVPDTPTESDWDVLMEIESFEEHERVVKEELEERMDKTRGLWDDIYRSARKSEKLKFESNERDEGELERTGQPV CIYEIYDGAGAWPLLHHGSLYRGLSLSTKARRSRSDDVDAVARLPLLNESYYQNILCEIGGMFSIAIRVDAIHKRPWIGFQSWHAAGRKVSLSFKAEKVL EEKTQEENKDVMYFWARLGMDGGVTGSNEELTFWSMCDVLNGGRCRTAFEDAFRQMYDLPSYLEALPPMPEDGGHWSALHSWVMPTPSFLEFIMFSRMFV DSLDALQSNSSQVNKCLLSSTELEEKHCYCRIMEVLVNVWAYHSARRMVYIDPHTGSVEEQHPIKQRKEIAWKKYFNLTVLKSMDEDLAEAADDGDHPRE RWLWPLTGEVHWQGIYEREREERYRIKMDKKRKTREKLVERLKAGYKQKPLGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04480			UDP-Glycosyltransferase superf...		Potri.010G232000 [exp]	0	1
AT5G07740			actin binding (.1)		Potri.015G061001 [exp]	1.41	0.8584
AT1G64790		ILA	ILITYHIA (.1.2)		Potri.019G024200 [exp]	3.60	0.8927
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.003G074200 [exp]	8.94	0.8161
AT1G35530			DEAD/DEAH box RNA helicase fam...		Potri.013G109600 [exp]	10.04	0.7578
AT5G08110			nucleic acid binding;ATP-depen...		Potri.012G063201 [exp]	10.48	0.8090
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	10.81	0.8052
AT1G11390			Protein kinase superfamily pro...		Potri.011G041500 [exp]	12.64	0.8131
AT1G20760			Calcium-binding EF hand family...		Potri.007G063200 [exp]	14.49	0.8036
AT1G15240			Phox-associated domain;Phox-li...		Potri.001G183100 [exp]	18.84	0.7700
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.006G099402 [exp]	21.35	0.8253

Compare expression of checked genes

Potri.010G232000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.