Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52190 511 / 0 AtPHF1, PHF1 phosphate transporter traffic facilitator1 (.1) AT5G50650 139 / 2e-37 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50550 139 / 2e-37 Transducin/WD40 repeat-like superfamily protein (.1) AT2G01470 137 / 7e-37 ATSEC12, STL2P SEC12P-like 2 protein (.1) AT1G73720 49 / 5e-06 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT4G02730 48 / 7e-06 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 46 / 3e-05 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G71840 45 / 8e-05 transducin family protein / WD-40 repeat family protein (.1) AT1G11160 44 / 0.0001 Transducin/WD40 repeat-like superfamily protein (.1) AT3G53390 43 / 0.0004 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029200 [exp] 684 / 0 AT3G52190 489 / 2e-173 phosphate transporter traffic facilitator1 (.1) Potri.008G130300 [exp] 170 / 7e-49 AT2G01470 355 / 2e-120 SEC12P-like 2 protein (.1) Potri.010G111800 [exp] 157 / 4e-44 AT2G01470 346 / 7e-117 SEC12P-like 2 protein (.1) Potri.011G156900 [exp] 50 / 2e-06 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Potri.007G009500 [exp] 49 / 2e-06 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 49 / 4e-06 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 48 / 6e-06 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G144400 [exp] 43 / 0.0004 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.011G045500 [exp] 43 / 0.0005 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037923 [exp] 590 / 0 AT3G52190 497 / 2e-176 phosphate transporter traffic facilitator1 (.1) Lus10038651 [exp] 577 / 0 AT3G52190 484 / 2e-171 phosphate transporter traffic facilitator1 (.1) Lus10017451 [exp] 572 / 0 AT3G52190 516 / 0.0 phosphate transporter traffic facilitator1 (.1) Lus10028830 [exp] 565 / 0 AT3G52190 518 / 0.0 phosphate transporter traffic facilitator1 (.1) Lus10035728 [exp] 166 / 7e-47 AT2G01470 332 / 3e-111 SEC12P-like 2 protein (.1) Lus10037313 [exp] 161 / 2e-45 AT2G01470 328 / 2e-109 SEC12P-like 2 protein (.1) Lus10038425 [exp] 53 / 3e-07 AT1G73720 956 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10023381 [exp] 53 / 3e-07 AT1G73720 953 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10039636 [exp] 49 / 3e-06 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033710 [exp] 45 / 8e-05 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.010G232400.1 pacid=42799465 polypeptide=Potri.010G232400.1.p locus=Potri.010G232400 ID=Potri.010G232400.1.v4.1 annot-version=v4.1 ATGCAGGGAACTGTAACATGCGGGTCATGGATCCGGAGACCTGAGAACTTGAATCTTGTTGTGCTTGGCAAGTCATCGAAGAAGAGAGAGTCTGCTTCTC GGTCTGTGCTTGAGATCTTCTCTTTTGATCCCCAAACAGCTTCTCTCTCAAACTCTCCTCAGGTAACTTATGTGTTTGAAGAGACAGAAGGTGAACCAGT GACAATTGCAGTGCATCCAAATGGAGATGATTTTGTGTGTTCTACAAGTAAAGGTGGATGCAAATTACTTGAGTTGTCTGGTCAAGAAACAAATTTAAAG TTGTTAGCCAAAGAACTACCTCCTCTCCAAGATGTTGGTCCACAGAATTGCATGGCTTTTAGTGTTGATGGGTCTAAATTTGCCACTGGTGGGGTGGATG GGCGTGTAAGAATTTTGAAGTGGCCGAGTTTGCGCATCATTTTGGACGAAGCAAAAGCACACAATTCTGTCAGGGATATGGATTTTAGCCTGGATTCAGA GTTCCTAGCTTCAACATCTACTGATGGGTCAGCAAGAATATGGAAAGCAGAAGATGGTTCAGCTGTGGCTACTTTGACTCGCAACTCAGATGAAAAGATT GAATTGTGCCGATTCTCCAAGGATGGGACGAAACCATTTTTATTTTGTGCTGTGCAGAAAGGTGACAAAGCTGTCACTTCAGTTTATGATATAAGTACAT GGAAAAAGATTGGGTATAAGAGGCTACTTAGAAAGCCTGCTGCCATTATGTCTATCAGCCTGGACGGGAAATATCTTGCTCTAGGAAGCAAAGATGGAGA TGTCTGTGTAGCAGAAGTAAAGACAATGGAGGTTTCCCACTTGAGTAGGAGGCTGCACCTGGGTACATGCATTACATCTCTGGAGTTCTGTCCCAGTCAA AGGGTTGTGCTTACTACTTCCAATGAATGGGGAGCAGTGGTAACTAAGTTGAATGTTCCTGCAGATTGGAAAGAGTGGCAGATTTATTTGGTTCTCGTAG GACTGTTCCTGGCGTCTGCTGTTGCATTTTACATTTTCTTTCAAAACTCTGATTCATTTTGGAAATTTCCACTTGGAAGAGATCAGCCTGGAAGGCCGAA GTTTGAAATTTTGGATCCACAGTACTCTGAAGATGCATTTGGGCCTCTAGATATGTGA
AA sequence Show only first row Show all	>Potri.010G232400.1 pacid=42799465 polypeptide=Potri.010G232400.1.p locus=Potri.010G232400 ID=Potri.010G232400.1.v4.1 annot-version=v4.1 MQGTVTCGSWIRRPENLNLVVLGKSSKKRESASRSVLEIFSFDPQTASLSNSPQVTYVFEETEGEPVTIAVHPNGDDFVCSTSKGGCKLLELSGQETNLK LLAKELPPLQDVGPQNCMAFSVDGSKFATGGVDGRVRILKWPSLRIILDEAKAHNSVRDMDFSLDSEFLASTSTDGSARIWKAEDGSAVATLTRNSDEKI ELCRFSKDGTKPFLFCAVQKGDKAVTSVYDISTWKKIGYKRLLRKPAAIMSISLDGKYLALGSKDGDVCVAEVKTMEVSHLSRRLHLGTCITSLEFCPSQ RVVLTTSNEWGAVVTKLNVPADWKEWQIYLVLVGLFLASAVAFYIFFQNSDSFWKFPLGRDQPGRPKFEILDPQYSEDAFGPLDM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Potri.010G232400 [exp]	0	1
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Potri.004G161200 [exp]	1.00	0.7445
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Potri.013G148500 [exp]	2.00	0.6827
AT5G25770			alpha/beta-Hydrolases superfam...		Potri.006G240600 [exp]	4.58	0.6806
AT1G32120			unknown protein		Potri.001G132800 [exp]	8.00	0.6606
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G101250 [exp]	11.48	0.6049
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.002G007800 [exp]	12.04	0.6137
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.013G010900 [exp]	12.84	0.5367	ALPHA.11
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Potri.002G197600 [exp]	15.81	0.5475	ATFIP37.1
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Potri.014G167200 [exp]	16.52	0.5885
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Potri.014G069600 [exp]	20.00	0.5875

Compare expression of checked genes

Potri.010G232400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.